PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010294
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 427aa    MW: 48290 Da    PI: 4.4781
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010294genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.51.9e-17141531128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiy.kvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                  lp+G +F Pt  elv +yL + ++g  ++++   ++e d y + ePw+L k    + ++e++++y F+k +kk+at+  ++   + g W+   k+k+ 
  Lus10010294  14 LPAGAKFMPTATELVEHYLYNYIHGIFTPTQCYpVQESDHYgENEPWELWKdhqtRSHSETNDVYLFTKLKKKAATNFVRTIGNAGGNWHGEVKEKTC 111
                  699**********************98777555699998772679****643433444466688********99987665555678**********99 PP

          NAM  93 lsk.kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                  + + +g++     +g ++ +++ ++r+ ++e+ +W++ eyr+
  Lus10010294 112 TPEfRGRVdgfiwTGKRRKFTYRNNREVESENGKWILYEYRI 153
                  99874444677779**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-1912163IPR003441NAC domain
PROSITE profilePS5100520.64114185IPR003441NAC domain
PfamPF023651.2E-1115153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MENGADISDA PSLLPAGAKF MPTATELVEH YLYNYIHGIF TPTQCYPVQE SDHYGENEPW  60
ELWKDHQTRS HSETNDVYLF TKLKKKAATN FVRTIGNAGG NWHGEVKEKT CTPEFRGRVD  120
GFIWTGKRRK FTYRNNREVE SENGKWILYE YRIGNFDTVV CTLRNNGSPA AAEAEKRLVN  180
GMRKRKFEEI LGCIVPDRRI ELISVPARKK LQCHRDQSNS TAIVPATPIL VENETTSFGD  240
AIVPVQNETA ACEGAGYIVL VPLIPPTRNN RVQSGVEEGT APFRNVSNME NLIFSLEEIF  300
EGISEPEAKL CDVDEEAPNN DSFTTYCDIG VILDDVIATE APQITDDRQD AIRTGKDGVI  360
PRDDGDDVEL LQFGDFEEVT RENMLLQQQQ QQRWCTPPLL LEENRYYTPI SSLWDWDDCL  420
PLPIST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010294
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100102940.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.19e-11NAC domain containing protein 57