PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10010177

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

TCP

Protein Properties

Length: 311aa MW: 33107.9 Da PI: 11.1277

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10010177	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.3	2.8e-38	64	149	2	86
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 ++kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s +ssa++++ Lus10010177 64 TVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStVSASVRSSAAAPT 149 689*****************************************************************988843333333333222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.209	70	124	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	4.1E-33	70	146	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MSSSDAAAAH SNGVSNGGSM MIHHRQQQQQ QQQQQQLIHH LPPPSSPVPA VSAAGGNGGN 60 GVLTVKKPPS KDRHSKVDGR GRRIRMPIIC AARVFQLTRE LGHKSDGQTI EWLLRQAEPS 120 IIAATGTGTT PASFSTVSAS VRSSAAAPTL ASFSSNSMDH KPLLGPAPFI LGKRVRSDDD 180 SANNGGDKDD GGGVGVPVGH SVASLVAPTP LNGPGGVCAG PWMECVXXXX XXWAGVFLPP 240 PRWRWARSAP HSMSTSSKLR RGRRPPLWGR HQLPESEITF LATSICWRSY QVGRVIPTGE 300 RRINVEWSES *

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10010177

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021628682.1	7e-68	transcription factor TCP21-like
TrEMBL	A0A2C9V0D4	2e-66	A0A2C9V0D4_MANES; Uncharacterized protein
STRING	Lus10010177	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-37	TCP family protein

Link Out ? help Back to Top
Phytozome	Lus10010177