PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10010148 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 576aa MW: 64418.2 Da PI: 5.4277 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.7 | 1.6e-51 | 9 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lp G+rF+Ptdeel+++yL+ k++g++ e+ ++++e+d++k+ePwdLp + +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++s+ Lus10010148 9 LPLGYRFQPTDEELINHYLRLKINGRDSEV-DAVPEIDVCKWEPWDLPglSVIKTNDPEWFFFCPRDRKYPNGHRSNRATEAGYWKATGKDRTIKSRr 105 699************************999.99***************6447888899**************************************97 PP NAM 96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +g+kktLvfykgrap+ge+++W+mheyr+ Lus10010148 106 agfSPKSIGMKKTLVFYKGRAPRGERSNWIMHEYRA 141 7777778***************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-59 | 4 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.938 | 9 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-27 | 10 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 576 aa Download sequence Send to blast |
MSALAVQSLP LGYRFQPTDE ELINHYLRLK INGRDSEVDA VPEIDVCKWE PWDLPGLSVI 60 KTNDPEWFFF CPRDRKYPNG HRSNRATEAG YWKATGKDRT IKSRRAGFSP KSIGMKKTLV 120 FYKGRAPRGE RSNWIMHEYR ATEEDIVGTA PGQAAFVLCR LFRKPEIGAS PAAKCDEMEE 180 QTANSSGMDL GKQSDGVVPA DSNSYMNSDV EDLTMEANGA SDYKEFSYGD LGRLSGGDFH 240 YYDNDFGNEF NSFLDGMSEQ DAYLTDLLDE VFHNHGGELS FEEAASRMDR ESMLEDFNAD 300 DCNIYSSVAA KMTQQEQTGT AYEQCFAQAP FFNREVRSMN HRDTFVRQDA YFADPFTNTS 360 FGMFHPVENY VSFDNNVGGG TGIKIRTRPP EVRPPSKILI SQGTALRRLH FQTKLSRLQC 420 RNCVAGEDAV QCSVTKNQDA EEYDPTPDEQ PKQGWVDKLR RKIGRTLSEL HSFKGIKGSS 480 AAVANAGVGG SESAWMIGIT GAAFLVAGTA RVTIKLAAFD CWGEMILVAV LTELLEEYTA 540 LVARVLEHLV NDAPFPRRVR FLILRRLPFS SSHPH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-43 | 4 | 164 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-43 | 4 | 164 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-43 | 4 | 164 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-43 | 4 | 164 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-43 | 4 | 164 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-43 | 4 | 164 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-43 | 4 | 164 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-43 | 4 | 164 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-43 | 4 | 164 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-43 | 4 | 164 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-43 | 4 | 164 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-43 | 4 | 164 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-43 | 4 | 164 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-43 | 4 | 164 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10010148 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021674121.1 | 1e-129 | protein NTM1-like 9 | ||||
TrEMBL | A0A2P2KC48 | 1e-124 | A0A2P2KC48_RHIMU; Uncharacterized protein LOC105645554 isoform X1 | ||||
STRING | Lus10010148 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13625 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35580.1 | 1e-105 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10010148 |