PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10010098 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 163aa MW: 18501.8 Da PI: 9.9864 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 78.6 | 1.4e-24 | 31 | 109 | 50 | 127 |
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 +v+++e wy s+ d kya++k+ nr+tk+gyWk tgk + v +k +++++g+kktLvfykgr +kg++t+W+mhey+ Lus10010098 31 EVEHDEAIWYVLSPPDYKYANSKQVNRKTKAGYWKPTGKARIVRAKsSRNQIGTKKTLVFYKGRVRKGVRTQWIMHEYK 109 455566789*********************************999877889***************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 28.041 | 1 | 128 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-13 | 30 | 109 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.89E-26 | 34 | 128 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 163 aa Download sequence Send to blast |
MEVAPHLDLA FVAAEMGSPH TCHSFRKASS EVEHDEAIWY VLSPPDYKYA NSKQVNRKTK 60 AGYWKPTGKA RIVRAKSSRN QIGTKKTLVF YKGRVRKGVR TQWIMHEYKS SSTFPHQRDF 120 LLYKLMKKSS SEGTSNGGDY EDDGETSSSN FESFPFNSYS QL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-18 | 36 | 131 | 70 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-18 | 36 | 131 | 70 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-18 | 36 | 131 | 70 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-18 | 36 | 131 | 70 | 168 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-18 | 36 | 131 | 70 | 168 | NAC domain-containing protein 19 |
4dul_B | 5e-18 | 36 | 131 | 70 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10010098 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011035223.1 | 1e-35 | PREDICTED: NAC domain-containing protein 45-like isoform X1 | ||||
Refseq | XP_011035229.1 | 1e-35 | PREDICTED: NAC domain-containing protein 45-like isoform X1 | ||||
Refseq | XP_011035239.1 | 1e-35 | PREDICTED: NAC domain-containing protein 45-like isoform X1 | ||||
TrEMBL | B9GPV5 | 3e-32 | B9GPV5_POPTR; Uncharacterized protein | ||||
STRING | Lus10010098 | 1e-119 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2065 | 25 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G01550.1 | 3e-24 | NAC domain containing protein 69 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10010098 |