PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010096
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 462aa    MW: 52567.9 Da    PI: 6.5595
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010096genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1171.9e-36772053127
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew..yfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  +G+rFhP+d+elv++yL++k+ g+++     ++ev+iy ++Pw+L  + +++ +ew  y F++r  ky ++kr nr+tk+gyWk tgk +ev+ k ++
  Lus10010096  77 VGYRFHPRDDELVDYYLRRKILGEDIGD-VSLDEVKIYCSDPWELLGRSNNQLDEWvfYCFCPRFYKYVNSKRCNRTTKNGYWKPTGKIREVKGKkTK 173
                  7************************877.45**************877777777998899999999***************************98677 PP

          NAM  98 elvglkktLvfykg..rapkgektdWvmheyr 127
                  +++g+kktLvfyk+  + pkg+ t  vmhey+
  Lus10010096 174 KKIGTKKTLVFYKKdkEFPKGVITPYVMHEYE 205
                  88**********7522669************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-4068226IPR003441NAC domain
PROSITE profilePS5100540.575226IPR003441NAC domain
PfamPF023658.4E-2277205IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MASVLSGIHH FHTHDQTELS CGILTQNRGQ SKHPVSPDSR QKFNRRAAVL GRGMNPNFMS  60
VVENVVESAA PSPGEVVGYR FHPRDDELVD YYLRRKILGE DIGDVSLDEV KIYCSDPWEL  120
LGRSNNQLDE WVFYCFCPRF YKYVNSKRCN RTTKNGYWKP TGKIREVKGK KTKKKIGTKK  180
TLVFYKKDKE FPKGVITPYV MHEYEYMADP NSLDKEKFTL CKLKRKRDKR IPKNTNTTNH  240
HASTICSEAS HFGDQISPSP QGEGCYSIQE FTCESSEASH VPGSKFENQM SSMERGEWND  300
VLEQESREYS EANCLKASDL VSPVLPEEAT NSYQVDNQAP WEYNKATCFT AFDLRSPVSP  360
PSKDEGCLTP STLESHSVWD NDRQGQVVDS TARIHQHSNI YIDASCHEVE PCFSGTRTPN  420
FEFQKKQMEM PILSASEWND LYNLLLFPEV DPASVDLIAT S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-257822918171Stress-induced transcription factor NAC1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222229LKRKRDKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100100960.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.12e-27NAC domain containing protein 71