PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10010080

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Protein Properties

Length: 324aa MW: 36944.4 Da PI: 9.4547

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10010080	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.3	4.2e-16	12	121	2	98
EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE.............EEETTE....EEE-.TTHHHHHHHHT--TT-E CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy...........rkksgr....yvlt.kGWkeFvkangLkegDf 79 fk+ + + ++rl+lp +f+++h ++k +++t tl+ ++g +W+v + + + ++l+ +GW+eFv ++ L+ g f Lus10010080 12 FKIILE-TTIFNKRLMLPTTFVRNHylksVSSKSSPTTATLTIPNGLTWKVDVVVnasttttnddhG----GgpeeVWLQgQGWEEFVTSHSLEHGHF 104 555544.4445668***********9966678999************77666665543222....13555555569************ PP EEEEE-SSSEE..EEEEE- CS B3 80 vvFkldgrsefelvvkvfr 98 +vF+++g+s+f v vf+ Lus10010080 105 IVFQYEGNSNF--SVLVFD 121 *****9999..777775 PP
2	B3	38.2	2.5e-12	232	315	18	93
--HHH.HTT---..--SEEEEEETTS.........-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 18 lpkkfaeehggkkeesktltledesg.........rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +p+ fa+ ++k ++ +l + + + W v+ + ++++++++++GW++Fv +n Lk+gD++ Fk+++ ++ v Lus10010080 232 IPRAFARGLMLKD-QNLKLEVVAADDnyiysnkeqQCWVVEAKKVRTRNEMFISGGWSKFVGDNSLKDGDTCKFKMIRVGTTPQV 315 7777777774432.22233333333344666666699***99999999***********************9875444334 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.14E-17	5	123	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.4E-17	5	122	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.56E-14	9	121	No hit	No description
PROSITE profile	PS50863	11.744	10	123	IPR003340	B3 DNA binding domain
SMART	SM01019	9.0E-11	11	123	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.4E-12	12	120	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.2E-12	203	321	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.28E-12	206	312	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	2.0E-4	219	321	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.969	232	323	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.9E-10	232	315	IPR003340	B3 DNA binding domain
CDD	cd10017	3.09E-12	232	316	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MTGFETEKPR FFKIILETTI FNKRLMLPTT FVRNHYLKSV SSKSSPTTAT LTIPNGLTWK 60 VDVVVNASTT TTNDDHGGGP EEVWLQGQGW EEFVTSHSLE HGHFIVFQYE GNSNFSVLVF 120 DISASEIDYL VPLKRKEEAE FKDRDDDDDL SMEIKLNPDF GSLSKPGKRG RRNLEISNSF 180 TAVIKKKHDK RHLLASLFSP RPPRESYMSL VMKGMISSIF LLFFPLWHVQ NIPRAFARGL 240 MLKDQNLKLE VVAADDNYIY SNKEQQCWVV EAKKVRTRNE MFISGGWSKF VGDNSLKDGD 300 TCKFKMIRVG TTPQVLQVFI TKK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10010080

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10010080	0.0	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	4e-17	B3 family protein

Link Out ? help Back to Top
Phytozome	Lus10010080