PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010076
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GeBP
Protein Properties Length: 451aa    MW: 51157 Da    PI: 4.7967
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010076genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57359.59.2e-1984181798
       DUF573   7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkv...sksqlveKirrLKkKfkkkvkk...aksgkepsfskehdqkifelskkiWgs 98 
                  ws +Dei+lL ++i++k++ g +p++++ af ++++ks s++v   +k+ l +K+r++Kk +   vk+    ++++ p+fs +++++ f+l+ kiWgs
  Lus10010076  84 WSFKDEIALLDAVIQYKSQIGPDPWSNWAAFLDYIEKSGSLQVkipTKDSLAKKVRKFKKDYLSIVKRnegESENQAPVFSDPDERDLFHLCDKIWGS 181
                  ************************************99888874455999**************999966666777899*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.6E-1784180IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MAKKNRPIEQ EQEADQLKST PSKPSARKAA APQSDNEPDS DSSCSSPSLS AFEVKPIAMQ  60
TAPRKKETPS PPKEKKSDDG KGRWSFKDEI ALLDAVIQYK SQIGPDPWSN WAAFLDYIEK  120
SGSLQVKIPT KDSLAKKVRK FKKDYLSIVK RNEGESENQA PVFSDPDERD LFHLCDKIWG  180
SGEDQDCSLK KDNPPKKVNL GPRLDENPAK KSRGSEVAKE KEKETRVVVE EDKRKGTVKK  240
SNSGIILGLP IEEPPAKKRR RSEAKKQKET RVVMKDDEND SEKEKGREKE AVLVMVEENG  300
VNEDDDDDGE KENDANEDED EDKGKNDVND DVEDKENDAN EDDDAEEKGK EKGKGKETDV  360
VMEKHELWQK YPRVFASMVV RLAFMDKAHG GNVSDLRQVC KEIIEKADEE KLKDWESRWQ  420
KQMKVELEAL VGRKTLEIEE STEWLDILQR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010076
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100100760.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.14e-10DNA-binding storekeeper protein-related transcriptional regulator