PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010053
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 345aa    MW: 37352.1 Da    PI: 10.0552
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010053genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.6e-30271329259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   D y+WrKYG K++kgs++pr+YY+C+s  +Cp++k+ver+ +dp ++++tYeg+Hnh+
  Lus10010053 271 TDDYSWRKYGHKPIKGSPHPRGYYKCSSVkECPARKHVERALDDPMMLIVTYEGDHNHN 329
                  69*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.2E-15222267IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.0E-31262330IPR003657WRKY domain
PROSITE profilePS5081128.61265331IPR003657WRKY domain
SuperFamilySSF1182901.96E-25268330IPR003657WRKY domain
SMARTSM007743.4E-35270330IPR003657WRKY domain
PfamPF031061.1E-25272328IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAVELMMGYS GEGRFATKFQ ESALKEAATA GVRSVEEVIN LLNKNFYKEE ASGSTGSSGS  60
SSSSAAVDAN PDIKVVTDLA VNNFKKVVSL LGRPNRTGHA RFRRAPTVDA AGAVTKQGSA  120
SVSGTGSAFK VYQPTPVHRL PPLPTNHYQN YQKAATKERN ELVLPCTINF SNSPSISGAT  180
SFISSVTGET SDSMQRSMSS SGFQLTHPHS HGKPPLSSSS LKRKCSSMDD TNALKCGSSS  240
SRCHCSKKRK LKMRRVVRIP AISSKLAYIP TDDYSWRKYG HKPIKGSPHP RGYYKCSSVK  300
ECPARKHVER ALDDPMMLIV TYEGDHNHNH TDLPPTTAHV QESC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-19258335275WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010053
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020533746.11e-144probable WRKY transcription factor 7
SwissprotQ9STX01e-100WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLS5CS781e-143S5CS78_JATCU; WRKY transcription factor 42
STRINGLus100100530.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-73WRKY DNA-binding protein 7