PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010037
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 288aa    MW: 32777.5 Da    PI: 5.9148
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010037genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.93.1e-3051491128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk........lelee...vikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksg 81 
                  lppG+rF P+d++l+++yL++k +g+         +   +    ike+d+y++eP dLp+        k+++k+w+ ++k + ++++++ ++r +k g
  Lus10010037   5 LPPGCRFYPSDQQLLCYYLTNKNHGDGdgcnqhedT---NgydLIKELDLYDHEPFDLPQhscysyGPKGRKKHWFCYAKIRVSKEENRGNRRRAKGG 99 
                  79*********************9999776554433...15548***************5566554333466788888887777666555566899** PP

          NAM  82 yWkatgkdkevlsk..kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                  yW+  gk ++v+++  +++ vg+++ +vfy g + +++++tdW++ ey+l
  Lus10010037 100 YWRRLGKVRDVMESgwNSAIVGTRTRFVFYLGnSVKSATRTDWILYEYSL 149
                  *************9888999**********883567789*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-343165IPR003441NAC domain
PROSITE profilePS5100536.7375165IPR003441NAC domain
PfamPF023657.9E-176149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MPFDLPPGCR FYPSDQQLLC YYLTNKNHGD GDGCNQHEDT NGYDLIKELD LYDHEPFDLP  60
QHSCYSYGPK GRKKHWFCYA KIRVSKEENR GNRRRAKGGY WRRLGKVRDV MESGWNSAIV  120
GTRTRFVFYL GNSVKSATRT DWILYEYSLL DHSMASFVLC RVFVKSRIGN SVSENILSCC  180
AEESVSALRH IGVQCDGISD HVQHETSSGD KNEVPEHLLM QNNTPAGDTS GTNGFASVSG  240
YQYLLPANAP PDQNHEHVER KWFTDADPSE LLQIIMEEDY LEMDDLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-19316515165NO APICAL MERISTEM PROTEIN
1ut4_B3e-19316515165NO APICAL MERISTEM PROTEIN
1ut7_A3e-19316515165NO APICAL MERISTEM PROTEIN
1ut7_B3e-19316515165NO APICAL MERISTEM PROTEIN
3swm_A3e-19316518168NAC domain-containing protein 19
3swm_B3e-19316518168NAC domain-containing protein 19
3swm_C3e-19316518168NAC domain-containing protein 19
3swm_D3e-19316518168NAC domain-containing protein 19
3swp_A3e-19316518168NAC domain-containing protein 19
3swp_B3e-19316518168NAC domain-containing protein 19
3swp_C3e-19316518168NAC domain-containing protein 19
3swp_D3e-19316518168NAC domain-containing protein 19
4dul_A3e-19316515165NAC domain-containing protein 19
4dul_B3e-19316515165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010037
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068313.11e-101NAC domain-containing protein 83
TrEMBLR4N5R61e-100R4N5R6_JATCU; NAC transcription factor 061
STRINGLus100100370.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130012628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.12e-25NAC domain containing protein 28