PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010027
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 141aa    MW: 14980.3 Da    PI: 10.619
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010027genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.95.8e-182659134
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                 C  C+tt+Tp+WR gp g++tLCnaCG++yrk +
  Lus10010027 26 CIDCHTTTTPCWRGGPAGPRTLCNACGIRYRKSR 59
                 889*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.8E-162071IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.95E-132359No hitNo description
PROSITE profilePS5011412.362456IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-142459IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.81E-122557No hitNo description
PROSITE patternPS0034402651IPR000679Zinc finger, GATA-type
PfamPF003201.4E-152659IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
METESTSSQF ICRQQEDQMM IRIRSCIDCH TTTTPCWRGG PAGPRTLCNA CGIRYRKSRN  60
AAASTSSSPS SSSSSGSAKK KRKTMIGKGK EAGAVPVKKL LGLMGLDSWK RKKQQLGEVE  120
IAAVLLMSLS GSISSSSSKC *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010027
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021668803.12e-26GATA transcription factor 16-like isoform X1
TrEMBLA0A2P2KDA62e-23A0A2P2KDA6_RHIMU; Uncharacterized protein MANES_01G224400
STRINGLus100100272e-96(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-14GATA transcription factor 16