PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009984
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family SBP
Protein Properties Length: 957aa    MW: 105786 Da    PI: 6.508
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009984genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP93.71.8e-29163236178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  +Cqve+C adls+ak+yhrrhkvCe+hska+++lv++++qrfCqqC +    ++  ++ rsCrrrLa+hn+rrrk+++
  Lus10009984 163 VCQVEDCGADLSKAKDYHRRHKVCEMHSKATKALVANVMQRFCQQCRK----EKLSDKMRSCRRRLAGHNKRRRKTNP 236
                  6*********************************************87....5667899****************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.3E-22156221IPR004333Transcription factor, SBP-box
PROSITE profilePS5114124.726161234IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.19E-27162238IPR004333Transcription factor, SBP-box
PfamPF031101.1E-20164233IPR004333Transcription factor, SBP-box
SuperFamilySSF484032.18E-8743840IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.8E-7744847IPR020683Ankyrin repeat-containing domain
CDDcd002045.15E-9745840No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 957 aa     Download sequence    Send to blast
MEARFGTEAS HFYDMRAVGK RSMEWDLNDW KWDGDLFIAR PLNAVVPSSS AAASAGMSKQ  60
FFPLNNTNNN SSNSSSSCSD EVGNLEMIEK GKRRRNKVID VEEDESLMVN GHQEEEAATL  120
SLKLGGHGGG EMVNWEGNSS GKKAKLTGGG GNNNNSSSSS RAVCQVEDCG ADLSKAKDYH  180
RRHKVCEMHS KATKALVANV MQRFCQQCRK EKLSDKMRSC RRRLAGHNKR RRKTNPEPGS  240
NSNTVNDDQT GGYLLISLLR TLSNMHSSKS EKSTDQDLLS HLLRSLAGQT IEHGNPKQAQ  300
LVHANGASLQ TSSSMKSRMP NNFPSCSEVR DSNPRSLKMN NFDLNDAYID SDDRTDDVER  360
SLVPANGGTS SLGCPSWAQQ DSLQSSPPQT SGNSDSASPQ SPSSSNGDGQ NRTDRIVFKL  420
FGKKPNDFPL VLRAQILDWL SHSPTDIESY IRPGCIVLTI YLRQDEAAWD ELCCDLSTSL  480
SRLLHTSFDS FWRTGWLFVM MEHQIAFAYN GQVVVDTSSP LRNTDCGKIC SVKPIAVSAA  540
GKVQFLIKGT NLSRSSTRIL CAIEGKYMVQ EDSDDLAHTK DIKDQGQLQC VPYSCSIPTG  600
LGRGFIEVEE DGISNSYFPF IVAEEDVCSE ICTLENALEF FETDVHGNLG EGGGKIEAKT  660
QAMEFIHEMG WLLHRIQSKS RLNDMDPNVD RFPISRMKWL MDFSMDHEWC AVVRRLLNVV  720
VRDGIVDLGG ECSSLNNALA EMGVLHRAVR RNSRPLVEFL LKYAPENDDE FLFRPDMAGP  780
GGLTPLHIAA GKDGSEDILD ALTDDPKMVG VEAWKNARDS TGFTPEDYAR LRGHYSYIHL  840
VQRKINRKLS EGSRHVVLDI PENEKQDEAL SSALEIMQSV LKKPSASSKS CKLCTGNKVA  900
YGVTSSRRSL LYRPAMLSMV AVAAVCVCVA LLFKSCPEVV YVLSPFRWEE LEYGTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-21155233284squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00603PBMTransfer from AT2G47070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009984
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082979.10.0squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A067K9350.0A0A067K935_JATCU; Uncharacterized protein
STRINGLus100099840.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]