PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10009969 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WRKY | ||||||||
Protein Properties | Length: 209aa MW: 21620.5 Da PI: 8.2454 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 67.3 | 2.3e-21 | 2 | 47 | 15 | 59 |
-TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 15 vkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 kg+++pr+YYrCt+a Cpv+k+v+rsaed++++++tYeg+Hnh+ Lus10009969 2 AKGNPCPRAYYRCTMAvACPVRKQVQRSAEDKSILITTYEGNHNHP 47 59**************9****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 1.6E-17 | 1 | 48 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.677 | 1 | 49 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.0E-17 | 2 | 47 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-19 | 2 | 49 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.93E-17 | 2 | 49 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MAKGNPCPRA YYRCTMAVAC PVRKQVQRSA EDKSILITTY EGNHNHPLPP AATAMAATTS 60 AAAAMLLSGS TTTTPNHHHP HFPFSSSSFL PHHHFPYSPT ATLSASAPFP TITLDLTNSP 120 PPPLQLVGHP LYSNDNKFSM PIVGCRDGGS TMMETVTAAI ASDPNFTVAL AAAVSKIMGG 180 GGSATASTTA VLPGSPQLPQ SCTTFSTN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-14 | 2 | 51 | 28 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10009969 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017969824.1 | 1e-76 | PREDICTED: probable WRKY transcription factor 47 | ||||
Swissprot | Q9XEC3 | 1e-47 | WRK42_ARATH; WRKY transcription factor 42 | ||||
TrEMBL | A0A061DRV7 | 2e-75 | A0A061DRV7_THECC; WRKY family transcription factor, putative | ||||
STRING | Lus10009969 | 1e-148 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10439 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01720.1 | 6e-38 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10009969 |