PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10009764 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 230aa MW: 25636.7 Da PI: 10.4056 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40 | 6.9e-13 | 133 | 216 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k ++ s+v+ +l lp f++ + +k ++ +tl de+g ++ + ++ + l++GWk+F+ a++L +gD ++F+l+ ++f Lus10009764 133 FVKSMLISHVSGGFWLGLPVWFCKPNL-PK-RDEVMTLIDEEGDEYPTIY--LPRKTG--LSGGWKGFAVAHNLADGDALIFQLITPTSF 216 8999*******************8884.43.5568***************..555544..***********************9976666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.06E-20 | 126 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-16 | 126 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.30E-23 | 131 | 218 | No hit | No description |
Pfam | PF02362 | 4.1E-11 | 133 | 217 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.828 | 133 | 224 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.1E-16 | 133 | 225 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MVAKAKQSNY EGLRLKRLEE NKKRMEALNL PMLSQSLRTT SPTPSPIKQS KLRPPVVEKQ 60 FVVVRRSSRV ANKPSPVYAE VIVERVVIPR RVSSKTRDLS NRVYASDEAR AEALEKAENL 120 QSSLQSQSHY PSFVKSMLIS HVSGGFWLGL PVWFCKPNLP KRDEVMTLID EEGDEYPTIY 180 LPRKTGLSGG WKGFAVAHNL ADGDALIFQL ITPTSFKVPL LLSLAAVFS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10009764 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012466565.1 | 1e-110 | PREDICTED: B3 domain-containing protein At5g42700 | ||||
Swissprot | Q9FMZ4 | 2e-75 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A0D2QCC6 | 1e-109 | A0A0D2QCC6_GOSRA; Uncharacterized protein | ||||
STRING | Lus10009764 | 1e-167 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 1e-74 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10009764 |
Publications ? help Back to Top | |||
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