PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009688
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 339aa    MW: 38658.2 Da    PI: 8.3784
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009688genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.4e-1624118199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ffk+ ++s    +  l++p+kf++++g+k  +s   tl+ + g  +Wev+l  + k+g  +  +GW++F++ + Lk g f+ F+++g+s+f   + ++
  Lus10009688  24 FFKIILHSTIRDK-KLMIPRKFISSYGSKVWRS--ATLQVPVGeDKWEVELVTDDKKGVWFCNDGWQRFAEFHSLKYGHFLFFEYKGDSTF--SIVIC 116
                  6777766555555.5***********9998887..6677766659******9999999999**************************9999..77777 PP

                  -S CS
           B3  98 rk 99 
                  ++
  Lus10009688 117 DT 118
                  75 PP
2B347.82.6e-15243336198
                  EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                  ff++ +++ + k+  + +p  f+++    +g+  ++++l +     + W v+l   ++++ + +++GWk+Fv++n Lk+gD+++F+l+++  + +++v
  Lus10009688 243 FFTIRITPTYAKQYFVHIPLWFTSQQrafQGE--KHVELEV---GDKAWPVNL---QCRRYVKFARGWKSFVEDNSLKTGDVCTFELIKElPSVSMKV 332
                  78888999999999999*****9888754333..4445554...45*******...55566889************************9999999999 PP

                  EEE- CS
           B3  95 kvfr 98 
                  ++ r
  Lus10009688 333 TITR 336
                  8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.04E-1822117IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-1922118IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.18223119IPR003340B3 DNA binding domain
CDDcd100173.76E-1523117No hitNo description
SMARTSM010192.3E-1824119IPR003340B3 DNA binding domain
PfamPF023621.9E-1324117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.1E-18236336IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-17237335IPR015300DNA-binding pseudobarrel domain
CDDcd100176.39E-14242336No hitNo description
PROSITE profilePS5086312.478243338IPR003340B3 DNA binding domain
SMARTSM010193.0E-8243334IPR003340B3 DNA binding domain
PfamPF023629.7E-13243336IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MASLGKPQHG NESNLNQQGA ITRFFKIILH STIRDKKLMI PRKFISSYGS KVWRSATLQV  60
PVGEDKWEVE LVTDDKKGVW FCNDGWQRFA EFHSLKYGHF LFFEYKGDST FSIVICDTTA  120
TEIQYPVTTK ANEAAAQPPK VKEEDYVSKE EDKSPIVSPT DDAKGKCPMV VPPTDGVAQV  180
SQMKRQRCNL IWEWNPCSAV KHELKVVSNL GENDASAGKP KSCWKRELIP VAKEEEFTSE  240
NPFFTIRITP TYAKQYFVHI PLWFTSQQRA FQGEKHVELE VGDKAWPVNL QCRRYVKFAR  300
GWKSFVEDNS LKTGDVCTFE LIKELPSVSM KVTITRDV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009688
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100096880.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-30B3 family protein