PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009494
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family CPP
Protein Properties Length: 661aa    MW: 72493 Da    PI: 9.1155
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009494genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.51.5e-14178215341
          TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                   k+CnCk+s+Clk+YCeCfaag +C+  C+C +C+N+ e
  Lus10009494 178 PKQCNCKNSRCLKLYCECFAAGIYCNG-CNCVNCHNNLE 215
                  699************************.********975 PP
2TCR512.8e-16260299140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  k++kgC+Ckks ClkkYCeCf+a+  Cse+C+C dCkN e
  Lus10009494 260 KHNKGCHCKKSGCLKKYCECFQANILCSENCRCMDCKNFE 299
                  589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011148.7E-17176216IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.653177300IPR005172CRC domain
PfamPF036386.4E-12179213IPR005172CRC domain
SMARTSM011141.0E-19260301IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.6E-12263298IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MEQGETVSDF APKKLARQLD FTAVCRASVN VAVPEHHSQL LQQASSTPPS PSARQQQQSL  60
QPMLQFHLQL QTPPSKRTPK PPRDQSRELA GAGAELRLHL QTPAPPLNQS HSEPLAQPTK  120
VMPQLQARSQ QMSAVHRIPH PVHKLPLPAM LPAKQESPRA HPKVDPEAKD VTVTPNKPKQ  180
CNCKNSRCLK LYCECFAAGI YCNGCNCVNC HNNLESEGTR QDAIGIILDR NPYAFKPKIA  240
SSPQGSSASE SPGVVQMIGK HNKGCHCKKS GCLKKYCECF QANILCSENC RCMDCKNFEG  300
SKERKAIYFG NSSGSIYVQQ AANAAINGAI GSSGYGIAPS SKKRKSNNIH DNGNKDSSLS  360
FSLKFQKENH LNGTTSALPE PRLRTTSSSL LGSSNLTYRS PLSGIIQPQH VKEMCSLLVV  420
LSREAGKEIA GSKGKTDKQP KGRKVENSSA SLIQERQHSL TLNVQDNCLD DSFKETTNER  480
ERKTDSLASR DRLENGRLPF PEIDLMCHEQ ELDFPKPESP TLEPAVCRHE TKEASSSSPD  540
FSEVYAEQER LVLTGFRDFL TRVITCGSIK GSTSDLRIFT RHACQTSHVW FYILTSKTAS  600
NFAETMHSSP GKPKAVNGMS ILHNPYSNGV MRSPVYKTSA QVRAAASPAN GRIQYPNGHN  660
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-2717530710130Protein lin-54 homolog
5fd3_B4e-2717530710130Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009494
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z4GSZ81e-170A0A2Z4GSZ8_HEVBR; Cysteine-rich polycomb-like protein
STRINGLus100094940.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2272824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-75Tesmin/TSO1-like CXC domain-containing protein