PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10009278 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 249aa MW: 28307.6 Da PI: 7.2978 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00035 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C k F++ s L H+r+H Lus10009278 4 HKCRFCFKFFPNGSALGGHMRSH 26 79********************9 PP | |||||||
2 | zf-C2H2 | 13.3 | 0.00025 | 155 | 177 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C k+F++ L H +H Lus10009278 155 YKCGTCEKVFKSYQALGGHRASH 177 9************9999998887 PP | |||||||
3 | zf-C2H2 | 14.6 | 9.6e-05 | 200 | 222 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++Fs+ L H r+H Lus10009278 200 HECPYCERVFSSGQALGGHKRSH 222 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.06E-9 | 3 | 26 | No hit | No description |
SMART | SM00355 | 0.1 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.7E-4 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.141 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.06E-9 | 150 | 177 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.9E-4 | 153 | 181 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 7.8E-11 | 154 | 180 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.097 | 155 | 177 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.97 | 155 | 182 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 157 | 177 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.7E-5 | 197 | 224 | No hit | No description |
SMART | SM00355 | 0.03 | 200 | 222 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.723 | 200 | 222 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 9.8E-12 | 200 | 222 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 202 | 222 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MEKHKCRFCF KFFPNGSALG GHMRSHMISL QTSSSSSSEE EIQSSSSSGV DKFANLFFYG 60 QNSNESSEWS KDPNRRRSKR MRKKQIEEAE AAERQVSSIS DARTNEEDLA FSLMMLSRDR 120 WRPPLEIEID EDEEGEEEEE CEIIKRGTSD NNRTYKCGTC EKVFKSYQAL GGHRASHKKE 180 KLLHHVIDHR PPRPQVDKLH ECPYCERVFS SGQALGGHKR SHFIGESANS IRCSKYLGTI 240 DLNLPALG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00416 | DAP | Transfer from AT3G60580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10009278 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017640280.1 | 3e-52 | PREDICTED: zinc finger protein ZAT9-like | ||||
Swissprot | Q9M202 | 3e-47 | ZAT9_ARATH; Zinc finger protein ZAT9 | ||||
TrEMBL | A0A2P5QYI7 | 3e-51 | A0A2P5QYI7_GOSBA; Uncharacterized protein | ||||
STRING | Lus10009278 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 2e-46 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10009278 |