PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10009218 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 1937aa MW: 216906 Da PI: 6.2675 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00039 | 1328 | 1353 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kC+ Cg++F +k++L+ H r+ + Lus10009218 1328 HKCEieGCGMRFETKEDLVLHSRNrC 1353 79*******************99866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00545 | 1.8E-13 | 15 | 55 | IPR003349 | JmjN domain |
PROSITE profile | PS51183 | 13.467 | 16 | 57 | IPR003349 | JmjN domain |
Pfam | PF02375 | 1.1E-13 | 17 | 50 | IPR003349 | JmjN domain |
SMART | SM00558 | 3.4E-46 | 283 | 452 | IPR003347 | JmjC domain |
SuperFamily | SSF51197 | 6.32E-26 | 284 | 450 | No hit | No description |
PROSITE profile | PS51184 | 34.624 | 286 | 452 | IPR003347 | JmjC domain |
Pfam | PF02373 | 2.6E-34 | 316 | 435 | IPR003347 | JmjC domain |
Gene3D | G3DSA:3.30.160.60 | 5.7E-5 | 1323 | 1350 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 8.1 | 1328 | 1350 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 0.21 | 1351 | 1375 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 1351 | 1380 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.1E-4 | 1352 | 1375 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 1353 | 1375 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.09E-14 | 1362 | 1418 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.4E-5 | 1376 | 1393 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0036 | 1381 | 1405 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.78 | 1381 | 1410 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 1383 | 1405 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.4E-9 | 1399 | 1423 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF51445 | 5.08E-178 | 1438 | 1926 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.80 | 1.4E-203 | 1438 | 1926 | IPR013781 | Glycoside hydrolase, catalytic domain |
Pfam | PF00232 | 1.3E-160 | 1450 | 1928 | IPR001360 | Glycoside hydrolase family 1 |
PROSITE pattern | PS00653 | 0 | 1456 | 1470 | IPR033132 | Glycosyl hydrolases family 1, N-terminal conserved site |
PRINTS | PR00131 | 1.4E-18 | 1751 | 1765 | IPR001360 | Glycoside hydrolase family 1 |
PRINTS | PR00131 | 1.4E-18 | 1829 | 1837 | IPR001360 | Glycoside hydrolase family 1 |
PRINTS | PR00131 | 1.4E-18 | 1852 | 1863 | IPR001360 | Glycoside hydrolase family 1 |
PRINTS | PR00131 | 1.4E-18 | 1874 | 1891 | IPR001360 | Glycoside hydrolase family 1 |
PRINTS | PR00131 | 1.4E-18 | 1898 | 1910 | IPR001360 | Glycoside hydrolase family 1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005975 | Biological Process | carbohydrate metabolic process | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009826 | Biological Process | unidimensional cell growth | ||||
GO:0033169 | Biological Process | histone H3-K9 demethylation | ||||
GO:0048577 | Biological Process | negative regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1937 aa Download sequence Send to blast |
MGNVEIPKWL QGLPLAPEFR PTDTEFADPI AYISKIEKEA GAFGMCKIIP PLPKPSKKYV 60 FSNLNKTLAK SPELGDNCSS LKSGSGVDGK DGDMRAVFTT RHQELGQSIK KKGVEKETPQ 120 MVFHKQVWQS GEVYTLEQFE SKSKAFAKSM LGSVKEVSPL VIEALFWKAA FEKPIYVEYA 180 NDVPGSAFGE PEGQFRYFNR RRRRRASYQS YRRHGEGYNC QNNELIAVDN NAADEVVDAS 240 IKSDPSPSSL STSSTALSSK FVKSYNQKGE SSSCDVEGTA GWKLSNSPWN LQMIARSPGS 300 LTRYMPDDIP GVTSPMVYIG MLYSWFAWHV EDHELHSMNF LHTGSPKTWY SVPGDYAFAF 360 EEIIRRQAYG GKLDRLASLS RLGEKTTLLS PEVVVSSGIP CCRVIQNPGE VVVTFPRAYH 420 VGFSHGFNCG EAANFSTPQW LEVAKEAAVR RAAMNYLPML SHQQLLYLLT MSFVLRVPRS 480 LLPGARSSRL RDRQKEEREL SVKRAFIEDL LRENNTLRAI LRKGPGCKAV IWNPDLLPRA 540 SKQSQLIDTC TAATRMEEDL CHTRLEHENN STSNLFTEMS KYVESLNDLY ADGGDISCDF 600 QVDSGSLVCI ACGILGFPFM SVVQPSEKAA EESLYVDNTF RRVHSSADCN DDPHSVPDQT 660 PALKDLKVPT GWDISNKFLR PRIFCLEHGL QICELLQSRG GANMLVMCHS DFQKMKAYAT 720 SISEEINVPF DYTHIPLESA LNEDLNLIDL AIDGHDWDGR GEDWTSKMGV NLLHCVKIRK 780 KSPSTHVHHA LALAGLFTEG SLSSEFSTLK WESRRSRSRN KLNHSASFSG GKFESKKDDM 840 PEKVSDGVAR KEEKLLCYTR RKSKNKEDCS INGGQDQLYL IRQTSKVSRN SKVGINSLED 900 LGVNPDGVSE NHNEVQFHEA TATTTAVVNS GPSVDTTCSA VMSDPEAFSN SEMRNGIIAA 960 LESSERGLNS NVATDNGLLV ICKDDTENVI TYDRASKRGL NLQVDRDGLV SETSDVANSP 1020 SAEAELVVAE TCCTKREACN HVTSQSEQQE EGQKLPNSNY VISSNETVTT ETITLNGEAC 1080 EQLQDISLVE DAMQKQTEYC DDREEMMQSK LQSEEEPDLG PLDGSGSSES VREQIDLPVT 1140 TQELASSSTS EMEDQPIPET MEACCEPCAT SRTDEDSSAF KNSDGEVEPV NNSVDGMPEC 1200 FEIRTGSEMD EESSAVRSAV EENRSSPPHG HGSIESASSG SIHVKVRKRR RELDQITEDN 1260 LNFKSFVRSP CERLRPRRMG RDDPSTSGAD LEKIPVENAV AKRSRSKRPS NDPVNSQLKK 1320 KQVTKRPHKC EIEGCGMRFE TKEDLVLHSR NRCPYEGCRK KFSSHRYALI HQRVHDDDRP 1380 LKCPWKGCKM AFKWAWARTE HIRVHTGEKP YHCKVDGCGL AFSPLIIIII IIYHLATILH 1440 LVSSDSISRA HFPDGFIFGT ASSAYQFEGA ATEGNKGASI WDTFTRKPGS SSPGRILDFS 1500 NADVAVDQYH RFQDDIGLMK DLGMDTYRFS ISWARIFPNG TGNLNPEGIT YYNKLIDGLL 1560 EKGIKPYVTL YHWDLPQMLQ DKYGGWLDKK IIEDFEHYAN TCFKAFGDRV KNWITFNEPH 1620 NFAIQSYDFG IQAPGRCSII GHLFCKEGNS SAEPYIVAHH ILSSHAAAYH SYQSYFKGKQ 1680 GRIGIVLDAK WFEPKSDADE DKDAANRAMD FTLGWFLDPI FVGRYPLSMR KLAGERLPEI 1740 SSEMAKLITG SVDFVGLNHY TTSYVRNDRS RFQKLILQDA STDSAVITSS YRNGIAIGEK 1800 AASSWLRIVP WGIRKLMNYV KDKYGNPLVI ITENGMDDPN SPFIPREKAL QDEKRIEYHR 1860 DYLSNLSASI REDGCNVGGY FIWSLLDNWE WNSGYTVRFG LYYVDYSHNL TRIPKASVNW 1920 FKSMLRSQST ELDSQS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3gno_A | 0.0 | 1443 | 1927 | 8 | 488 | Os03g0212800 protein |
3gnp_A | 0.0 | 1443 | 1927 | 8 | 488 | Os03g0212800 protein |
3gnr_A | 0.0 | 1443 | 1927 | 8 | 488 | Os03g0212800 protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 195 | 204 | RYFNRRRRRR |
2 | 1246 | 1250 | RKRRR |
3 | 1302 | 1307 | RSRSKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10009218 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ885683 | 1e-146 | HQ885683.1 Linum usitatissimum clone Contig1587 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023913552.1 | 0.0 | probable lysine-specific demethylase ELF6 | ||||
Swissprot | Q6BDA0 | 0.0 | ELF6_ARATH; Probable lysine-specific demethylase ELF6 | ||||
TrEMBL | A0A0D2TY86 | 0.0 | A0A0D2TY86_GOSRA; Uncharacterized protein | ||||
STRING | Lus10009218 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8031 | 30 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 0.0 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10009218 |
Publications ? help Back to Top | |||
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