PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009214
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 83aa    MW: 9603.12 Da    PI: 9.334
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009214genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.92.4e-1520803398
                 -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
           B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98
                 +++l +     + W+v+l   ++++ + +++GWk+Fv+++ Lk+gD+++F+l+++  + +++v++ r
  Lus10009214 20 HVELEV---GDKAWTVNL---QCRRYVKFARGWKSFVEDKSLKTGDVCTFELIKElPSVSMKVTITR 80
                 333333...459******...55556889*************************9999999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.012182IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-14380IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-12379IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-12480IPR003340B3 DNA binding domain
CDDcd100172.39E-11480No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MQHIPLWFTS QQRAFQGEKH VELEVGDKAW TVNLQCRRYV KFARGWKSFV EDKSLKTGDV  60
CTFELIKELP SVSMKVTITR DV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009214
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100092142e-55(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-06related to vernalization1 1