PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009029
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 349aa    MW: 39511.8 Da    PI: 7.006
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009029genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.46.9e-5451331129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrFhPtd+el++ yL++kv+++++ + ++i ++d++k ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++s+ +g
  Lus10009029   5 LPPGFRFHPTDDELISSYLTRKVSDTSFAC-KAIVDADLNKNEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFSAtTG 101
                  79*************************999.88***************988999***************************************99788 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrle 129
                  +lvg+kktLvfykgrap+gek++Wvmheyrle
  Lus10009029 102 TLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLE 133
                  89****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-623153IPR003441NAC domain
PROSITE profilePS5100560.4135153IPR003441NAC domain
PfamPF023659.9E-296132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDDELIS SYLTRKVSDT SFACKAIVDA DLNKNEPWDL PGKASMGEKE  60
WYFFSLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIFSATT GTLVGMKKTL VFYKGRAPRG  120
EKSNWVMHEY RLENKHRFKS IKEEWVVCRV FQKSVSAQKK PQHVESSSQG SPCDTNSFVN  180
NNGFGDMEFP NPMEATHTFS SGLLFNDIST YNNNIMIDHE ISNNNNNLNN NNIVHLNMNQ  240
GQPSLIPWPT SNLLTSNLTM NSLLLKALQF RSYQQHHEAS SSVETNVDYS VLSNQHQHQH  300
QQQQLLQQDQ LGSSFQGSSS SSTSRALETA VQQAPSESGH LFNTDSIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-58415916171NO APICAL MERISTEM PROTEIN
1ut4_B2e-58415916171NO APICAL MERISTEM PROTEIN
1ut7_A2e-58415916171NO APICAL MERISTEM PROTEIN
1ut7_B2e-58415916171NO APICAL MERISTEM PROTEIN
3swm_A2e-58415919174NAC domain-containing protein 19
3swm_B2e-58415919174NAC domain-containing protein 19
3swm_C2e-58415919174NAC domain-containing protein 19
3swm_D2e-58415919174NAC domain-containing protein 19
3swp_A2e-58415919174NAC domain-containing protein 19
3swp_B2e-58415919174NAC domain-containing protein 19
3swp_C2e-58415919174NAC domain-containing protein 19
3swp_D2e-58415919174NAC domain-containing protein 19
4dul_A2e-58415916171NAC domain-containing protein 19
4dul_B2e-58415916171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009029
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009316.11e-133PREDICTED: NAC domain-containing protein 100-like
TrEMBLB9IE381e-130B9IE38_POPTR; Uncharacterized protein
STRINGLus100090290.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49463356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-96NAC domain containing protein 58