PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10008981

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NF-YB

Protein Properties

Length: 305aa MW: 32814.5 Da PI: 8.2446

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10008981	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	168.7	6.8e-53	82	177	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 reqd+++Pianv+rim+++lP +akis+daket+qecvse+isfvt+ea+++cqre+rkt+++dd+lwa+++lGf++yvepl++yl++yre+eg++ Lus10008981 82 REQDQYMPIANVIRIMRRILPPHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTVTADDVLWAMGKLGFDNYVEPLSLYLARYRETEGDR 177 89********************************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	8.5E-48	80	181	IPR009072	Histone-fold
SuperFamily	SSF47113	1.05E-35	84	182	IPR009072	Histone-fold
Pfam	PF00808	8.2E-25	87	151	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	7.8E-16	115	133	No hit	No description
PROSITE pattern	PS00685	0	118	134	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	7.8E-16	134	152	No hit	No description
PRINTS	PR00615	7.8E-16	153	171	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MERGGGDIEG VESSANRHPR QHARQPPAAA AVTGGPPPVP SVHSSSSSSR IGKIPLPAMN 60 PPPQQNPPPP GGRGRGRPLQ LREQDQYMPI ANVIRIMRRI LPPHAKISDD AKETIQECVS 120 EYISFVTGEA NERCQREQRK TVTADDVLWA MGKLGFDNYV EPLSLYLARY RETEGDRASY 180 RDPSLLVKRS AAAAHHHHRQ DFGPSMMMPP TAAPNFQMPQ GHNGNFPMPQ QGPNGNFQML 240 QQGGQNNNIN QGMYDAAAAG GYYREPMLFG SSSGQGSSSG GAGGGGEDGG AGMANFDHLY 300 SQFK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	5e-58	76	172	1	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10008981

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ902252	0.0	HQ902252.1 Linum usitatissimum cultivar CDC Bethune putative beta-galactosidase (Bgal1) and putative glycosyl transferase family 1 protein genes, complete cds; putative SUMO-activating enzyme 1A transcript gene, complete cds, alternatively spliced; putative transcription factor H2A superfamily proteins, putative protease, and hypothetical protein genes, complete cds; and putative ATP-binding cassette transporter gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021669717.1	2e-70	nuclear transcription factor Y subunit B-9-like
TrEMBL	F6LC75	0.0	F6LC75_LINUS; Putative transcription factor H2A superfamily protein
STRING	Lus10008981	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2728	32	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	4e-57	nuclear factor Y, subunit B6

Link Out ? help Back to Top
Phytozome	Lus10008981

Publications ? help Back to Top
Roach MJ, et al. Development of cellulosic secondary walls in flax fibers requires beta-galactosidase. Plant Physiol., 2011. 156(3): p. 1351-63 [PMID:21596948]