PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10008980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NF-YB | ||||||||
Protein Properties | Length: 270aa MW: 29407.9 Da PI: 4.5293 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 145.9 | 8.9e-46 | 32 | 125 | 3 | 97 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 eqd ++Pi+n++rim++vlP +akis+daket+q+cvse+isf+t+ea+++cq+++rkt+++dd+l+a+ +lGf++y+epl++yl++yre eg++ Lus10008980 32 EQD-HMPITNIIRIMRRVLPPHAKISDDAKETIQQCVSEYISFITGEANEHCQHQQRKTVTADDVLFAMQKLGFDNYLEPLSLYLARYREREGDR 125 555.69**************************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.8E-42 | 32 | 126 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.48E-33 | 35 | 125 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.5E-23 | 36 | 99 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.7E-14 | 63 | 81 | No hit | No description |
PRINTS | PR00615 | 3.7E-14 | 82 | 100 | No hit | No description |
PRINTS | PR00615 | 3.7E-14 | 101 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MNPAQQQQPP RNPPPAPLGG GRGGGVPVLI REQDHMPITN IIRIMRRVLP PHAKISDDAK 60 ETIQQCVSEY ISFITGEANE HCQHQQRKTV TADDVLFAMQ KLGFDNYLEP LSLYLARYRE 120 REGDRAYRDP RLLLNRSGAG HQDVGPTLVP LAPLAPAPAP PPQPPQPTMS FVPLAPAPGP 180 PPQPQQQQGL NSNFQMQLGD GYDNMNQLGM YDGGEASSSS AGLLNGYYGL DPFFFDFGSG 240 QGSNVEDIEG TSTDENGLID FDELYSQLK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 5e-50 | 25 | 120 | 1 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10008980 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ902252 | 0.0 | HQ902252.1 Linum usitatissimum cultivar CDC Bethune putative beta-galactosidase (Bgal1) and putative glycosyl transferase family 1 protein genes, complete cds; putative SUMO-activating enzyme 1A transcript gene, complete cds, alternatively spliced; putative transcription factor H2A superfamily proteins, putative protease, and hypothetical protein genes, complete cds; and putative ATP-binding cassette transporter gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015870158.1 | 2e-53 | nuclear transcription factor Y subunit B-6-like | ||||
TrEMBL | F6LC74 | 0.0 | F6LC74_LINUS; Putative transcription factor H2A superfamily protein | ||||
STRING | Lus10008980 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2728 | 32 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 2e-51 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | Lus10008980 |
Publications ? help Back to Top | |||
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