PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10008979 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NF-YB | ||||||||
Protein Properties | Length: 193aa MW: 21138.7 Da PI: 5.2467 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 125.8 | 1.7e-39 | 3 | 97 | 2 | 96 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 r qd+++P+a ++r+m+ +lP ++kis++ ket+q+ vse+is vt ea+++c++++r+t++++d+lwa+ lGf++yve+l++yl++yre eg+ Lus10008979 3 RPQDEYIPLATITRVMRSILPPRTKISEEVKETIQKAVSEYISIVTVEANEHCRHDQRRTVTAEDVLWAMDRLGFDNYVETLSLYLTRYRESEGH 97 569****************************************************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.9E-38 | 3 | 104 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.68E-30 | 5 | 105 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.6E-20 | 9 | 72 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.1E-10 | 36 | 54 | No hit | No description |
PRINTS | PR00615 | 1.1E-10 | 55 | 73 | No hit | No description |
PRINTS | PR00615 | 1.1E-10 | 74 | 92 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MPRPQDEYIP LATITRVMRS ILPPRTKISE EVKETIQKAV SEYISIVTVE ANEHCRHDQR 60 RTVTAEDVLW AMDRLGFDNY VETLSLYLTR YRESEGHPSA PSRDPNPTPP LNPTAQHHED 120 FRPTPLMPPS PLALTLALTL APPLQQQGPN SNFQMHQGDP LLLRLGLGQG NGSGGGGEDI 180 GGSTSDQNGA QL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-38 | 3 | 93 | 7 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10008979 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ902252 | 0.0 | HQ902252.1 Linum usitatissimum cultivar CDC Bethune putative beta-galactosidase (Bgal1) and putative glycosyl transferase family 1 protein genes, complete cds; putative SUMO-activating enzyme 1A transcript gene, complete cds, alternatively spliced; putative transcription factor H2A superfamily proteins, putative protease, and hypothetical protein genes, complete cds; and putative ATP-binding cassette transporter gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003556590.1 | 7e-43 | nuclear transcription factor Y subunit B-6 | ||||
Refseq | XP_025983113.1 | 7e-43 | nuclear transcription factor Y subunit B-6 | ||||
Refseq | XP_028219498.1 | 7e-43 | nuclear transcription factor Y subunit B-6-like | ||||
Refseq | XP_028219500.1 | 7e-43 | nuclear transcription factor Y subunit B-6-like | ||||
TrEMBL | F6LC73 | 1e-138 | F6LC73_LINUS; Putative transcription factor H2A superfamily protein | ||||
STRING | Lus10008979 | 1e-139 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 9e-41 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | Lus10008979 |
Publications ? help Back to Top | |||
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