PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10008897 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 333aa MW: 38822.1 Da PI: 7.1177 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.2 | 1.7e-49 | 24 | 149 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 +pGfrFhPt+eel+++yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + ++++ Lus10008897 24 MPGFRFHPTEEELIQFYLRRKVEGKPFNV-ELITFLDLYRYDPWHLPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRGENSSS 120 79***************************.89***************888889********************************************* PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +glkktLvfy+g+apkg +++W+m+eyrl Lus10008897 121 IGLKKTLVFYSGKAPKGIRSSWIMNEYRL 149 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-55 | 23 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.066 | 23 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-24 | 25 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MKENNGDHEV VEEEEDEHDH DMVMPGFRFH PTEEELIQFY LRRKVEGKPF NVELITFLDL 60 YRYDPWHLPA MAAIGEKEWF FYVPRDRKYR NGDRPNRVTT SGYWKATGAD RMIRGENSSS 120 IGLKKTLVFY SGKAPKGIRS SWIMNEYRLP HHDTQRYQKT EISLCRVYKR PGVEDHRGVP 180 STSSLPRSLP STFRQGRPMN SGASTASSVG LISNQLPTLT HHPLQLPPPP QQQQQQVLDH 240 AQEEEDQLML LNGTNNNNNL DDLHRLVNYQ QNHDHPSYLH PHHQLHMWEW DPLPPPRAPH 300 HDRQNQLQGG HRSAGDEHHH RHETNNHTNL FK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-53 | 13 | 170 | 7 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-53 | 13 | 170 | 7 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-53 | 13 | 170 | 7 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-53 | 13 | 170 | 7 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-53 | 13 | 170 | 10 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-53 | 13 | 170 | 10 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-53 | 13 | 170 | 10 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-53 | 13 | 170 | 10 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-53 | 13 | 170 | 10 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-53 | 13 | 170 | 10 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-53 | 13 | 170 | 10 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-53 | 13 | 170 | 10 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-53 | 13 | 170 | 7 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-53 | 13 | 170 | 7 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10008897 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012078844.1 | 1e-115 | NAC domain-containing protein 35-like | ||||
Swissprot | Q9ZVP8 | 1e-105 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | R4N5L6 | 1e-114 | R4N5L6_JATCU; NAC transcription factor 036 | ||||
STRING | Lus10008897 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7203 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 1e-102 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
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Phytozome | Lus10008897 |
Publications ? help Back to Top | |||
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