PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008701
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YC
Protein Properties Length: 273aa    MW: 30153.4 Da    PI: 4.8892
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008701genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC39.61.2e-121693098
        NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                 ++adedv +i+  +Pvl+ska elf+ +l  r++  + +   +t++   ++ +v+r ++fdfl +iv +
  Lus10008701  1 MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEVTLQRGAKTMNSLHLKHCVQRYNVFDFLREIVSK 69
                 899**************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.2E-18168IPR009072Histone-fold
PfamPF008084.8E-12154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.59E-19171IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MQADEDVGKI ALAVPVLVSK ALELFLQDLC DRTYEVTLQR GAKTMNSLHL KHCVQRYNVF  60
DFLREIVSKV PDYGNGQGHS DGSSDHKTIH KRKPTLDEGN ESDEESKKSR MMHDPSHPVG  120
TGRGRGRGRG RGRGRSVRNT EREYPHHEVE SESCTTPQGT RTSSIPAFPI DEKAESKEVI  180
KEPMQVTDGA TEPETKIDLN AEVKENEVTK PAAAPFSASA PAPGQGDTAM AIHEEYPGWS  240
LSEVDKMAID PVQLARLTTR IDEEAEDYDE EE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A6e-151552175Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124133RGRGRGRGRG
2124134RGRGRGRGRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008701
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021639416.13e-95dr1-associated corepressor homolog
TrEMBLA0A2P2JC658e-98A0A2P2JC65_RHIMU; Uncharacterized protein MANES_04G155300
STRINGLus100087010.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17283491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.16e-62nuclear factor Y, subunit C11