PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10008698

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

C2H2

Protein Properties

Length: 345aa MW: 36823.6 Da PI: 8.4762

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10008698	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H Lus10008698 146 FSCNFCKREFSTSQALGGHQNAH 168 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.85E-6	143	173	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.0E-4	144	172	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.468	146	173	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	148	168	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MEPIAKSENQ SPSNASSISA TASSEGAIRD KKAAGELVNS LKMKEKVSQL SQSSSSSPAA 60 QPPSGTTSSR VVLDLKLSND HHPNRETDKS LQLTLFNNRF NNKEEEGDSS GHPHHYDFLH 120 NTSRVVEVAE EEEGRITESL DQSRVFSCNF CKREFSTSQA LGGHQNAHKT ERAIAKKRQG 180 VEIGGGIGHF PYHPYSTLSS LPFYGSSSFS RSSSSILGLK ADSFIHKPPS SYPWSSPITA 240 ASLAYRSRYG AAPWPRVGPL QSHLDRLRLE SLGALHNNNS TNNKVETISL LKNFGPSNNN 300 CSSNIITIGS GSSQTPLASP SSTSGGGGIV PAAEGSDLDL SLKL*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MEPIAKSENQ SPSNASSISA TASSEGAIRD KKAAGELVNS LKMKEKVSQL SQSSSSSPAA  60
QPPSGTTSSR VVLDLKLSND HHPNRETDKS LQLTLFNNRF NNKEEEGDSS GHPHHYDFLH  120
NTSRVVEVAE EEEGRITESL DQSRVFSCNF CKREFSTSQA LGGHQNAHKT ERAIAKKRQG  180
VEIGGGIGHF PYHPYSTLSS LPFYGSSSFS RSSSSILGLK ADSFIHKPPS SYPWSSPITA  240
ASLAYRSRYG AAPWPRVGPL QSHLDRLRLE SLGALHNNNS TNNKVETISL LKNFGPSNNN  300
CSSNIITIGS GSSQTPLASP SSTSGGGGIV PAAEGSDLDL SLKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10008698

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10008698	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1822	30	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	2e-16	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Lus10008698