PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10008529 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 247aa MW: 28204.8 Da PI: 10.2475 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.1 | 1.8e-14 | 10 | 99 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ff ++ ++++l + lvlp kf++++g +e +k +t++ +g++W++++ + +gr++++kGW F+ ++ ++vFk++g+s+f+ +v Lus10008529 10 FFRIMDQKYTLDPKKLVLPVKFVANYG--EELGKVVTFNVADGKKWKIRV--GRVDGRTWFAKGWLAFAAYYSIRYAYMLVFKYNGNSCFNVRV 99 677888889999999********9999..45999****************..**************************************5544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.7E-20 | 6 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.55E-18 | 8 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.84E-13 | 8 | 100 | No hit | No description |
PROSITE profile | PS50863 | 12.196 | 10 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-11 | 10 | 99 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.3E-5 | 10 | 103 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MRQRRCSPNF FRIMDQKYTL DPKKLVLPVK FVANYGEELG KVVTFNVADG KKWKIRVGRV 60 DGRTWFAKGW LAFAAYYSIR YAYMLVFKYN GNSCFNVRVY GPHTAEIVYP TGGARIRTSV 120 ANDFEKIVEK AKRSEKRTIQ AAMELSLKNP SLTLVMKQYN NTTLPVGVTS APSGCVDEHL 180 LSPDCTYMKV IDSSGVKEWV IRLKRRDHRE MSACSSFVDR IECLMRAHTS FVFQLTKVDV 240 GKLWTP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10008529 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10008529 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 5e-21 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10008529 |