PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008523
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 299aa    MW: 33760.5 Da    PI: 9.1965
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008523genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00018831123
                 EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                 +kC+ C + F+++ +L+ H+++ H
  Lus10008523  8 HKCKLCFRIFPTSRSLTGHMKRaH 31
                 79********************97 PP
2zf-C2H216.82e-05192213223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  kC++C+k F+++  L +H r +
  Lus10008523 192 KCEKCTKQFRSSPALATHRRIC 213
                  8******************987 PP
3zf-C2H2130.0003232254123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+C k+F +   L  H r+H
  Lus10008523 232 FRCPYCYKVFGSGQALGGHKRSH 254
                  89**************9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.73E-7631No hitNo description
SMARTSM003550.039831IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.369836IPR007087Zinc finger, C2H2
PfamPF139120.01832IPR007087Zinc finger, C2H2
PROSITE patternPS0002801032IPR007087Zinc finger, C2H2
SuperFamilySSF576671.73E-7186212No hitNo description
SMARTSM0035516191211IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.787191212IPR007087Zinc finger, C2H2
SuperFamilySSF576674.45E-5229256No hitNo description
SMARTSM003550.1232254IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.138232259IPR007087Zinc finger, C2H2
PfamPF139126.2E-13232256IPR007087Zinc finger, C2H2
PROSITE patternPS000280234254IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEEKKKNHKC KLCFRIFPTS RSLTGHMKRA HHHQQLGGRN DNSSSSASES YLSAEAELDE  60
VAYELRQNPR KSFRVAADPY SDESETDSTR NPTRRRSQRT QKLSQKKRQR PPPAEEEQEP  120
ASSVSDASPE EELAMFLVMM SRDVNWRKRN RRFSNDDDEI EVREIEMAKK EDEEVREISN  180
SRVYRRGINK LKCEKCTKQF RSSPALATHR RICSLNTDGG ANAAAAERRR IFRCPYCYKV  240
FGSGQALGGH KRSHLSSTTG SYPSPAAQPP VKSSGGLLDL NFPPAATEDD DYSVVSDA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194107RRSQRTQKLSQKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008523
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021690429.14e-69zinc finger protein ZAT4-like
TrEMBLA0A067FDZ75e-59A0A067FDZ7_CITSI; Uncharacterized protein
STRINGLus100085230.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-20C2H2-like zinc finger protein