PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10008420

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 392aa MW: 44771.4 Da PI: 7.3434

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10008420	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.9	2.5e-50	32	157	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++++ Lus10008420 32 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITVLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENSRS 128 79*************************.89***********888889***************************************** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +glkktLvfy+g+apkg++++W+m+eyrl Lus10008420 129 IGLKKTLVFYSGKAPKGVRSSWIMNEYRL 157 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-55	31	177	IPR003441	NAC domain
PROSITE profile	PS51005	55.462	31	178	IPR003441	NAC domain
Pfam	PF02365	6.7E-25	33	157	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MSNEEINSSS SHPLDDDVEA DQKDEHENDM VMPGFRFHPT EEELVEFYLR RKVEGKRFNV 60 ELITVLDLYR YDPWELPAMA AIGEKEWFFY VPRDRKYRNG DRPNRVTTSG YWKATGADRM 120 IRTENSRSIG LKKTLVFYSG KAPKGVRSSW IMNEYRLPHV DTQRYQKTEI SLCRVYKRAS 180 VEDQHHGGGP SSSLPRSLPS TIRPQHQHHM GASSSSKNSK HHGCQRHQQL LRPPSQQLQH 240 HPFSLETTTS TTCTAATSTS TDSNLAAASL GVLPATLGAT IQPSTSNVVD DNNNTTFPPG 300 LDDLHLLVNY QQHQQQYYTR LLHHQQQQNQ NPSNYHDHQQ HQLQQTVIFP PSTSTASSSS 360 LQIWDWNLLP PPHQQHQNHY LPPPHHDNPS N*

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MSNEEINSSS SHPLDDDVEA DQKDEHENDM VMPGFRFHPT EEELVEFYLR RKVEGKRFNV  60
ELITVLDLYR YDPWELPAMA AIGEKEWFFY VPRDRKYRNG DRPNRVTTSG YWKATGADRM  120
IRTENSRSIG LKKTLVFYSG KAPKGVRSSW IMNEYRLPHV DTQRYQKTEI SLCRVYKRAS  180
VEDQHHGGGP SSSLPRSLPS TIRPQHQHHM GASSSSKNSK HHGCQRHQQL LRPPSQQLQH  240
HPFSLETTTS TTCTAATSTS TDSNLAAASL GVLPATLGAT IQPSTSNVVD DNNNTTFPPG  300
LDDLHLLVNY QQHQQQYYTR LLHHQQQQNQ NPSNYHDHQQ HQLQQTVIFP PSTSTASSSS  360
LQIWDWNLLP PPHQQHQNHY LPPPHHDNPS N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-56	33	180	19	167	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-56	33	180	19	167	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-56	33	180	19	167	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-56	33	180	19	167	NO APICAL MERISTEM PROTEIN
3swm_A	1e-55	33	180	22	170	NAC domain-containing protein 19
3swm_B	1e-55	33	180	22	170	NAC domain-containing protein 19
3swm_C	1e-55	33	180	22	170	NAC domain-containing protein 19
3swm_D	1e-55	33	180	22	170	NAC domain-containing protein 19
3swp_A	1e-55	33	180	22	170	NAC domain-containing protein 19
3swp_B	1e-55	33	180	22	170	NAC domain-containing protein 19
3swp_C	1e-55	33	180	22	170	NAC domain-containing protein 19
3swp_D	1e-55	33	180	22	170	NAC domain-containing protein 19
4dul_A	8e-56	33	180	19	167	NAC domain-containing protein 19
4dul_B	8e-56	33	180	19	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10008420

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021615085.1	1e-125	NAC domain-containing protein 35 isoform X2
Swissprot	Q9ZVP8	1e-105	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A0M5JHG9	1e-124	A0A0M5JHG9_MANES; NAC transcription factors 10
STRING	Lus10008420	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7203	31	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	1e-102	NAC domain containing protein 35

Link Out ? help Back to Top
Phytozome	Lus10008420

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]