PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008396
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 558aa    MW: 60452.5 Da    PI: 8.4007
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008396genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-0585105323
                  ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                  C++C+k F r  nL+ H r H
  Lus10008396  85 CEICNKGFQREQNLQLHRRGH 105
                  *******************88 PP
2zf-C2H211.90.00067160182123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H +t+
  Lus10008396 160 WKCDKCSKKYAVQSDWKAHSKTC 182
                  58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-582105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.1E-782105No hitNo description
SMARTSM003550.02183105IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94983105IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SMARTSM0035587125155IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-4148181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.1E-7155180No hitNo description
SMARTSM00355150160180IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MMMMKSFMFQ NQQQQEENMS NLTTSASGTE ASVSSSGHHP PPDISSSSAQ PPLKRKRNMP  60
GNPDPDSEVI SLSPKSLMAT NRFLCEICNK GFQREQNLQL HRRGHNLPWK LKQRNKDQVV  120
RRKVYVCPEP SCVHHDPSRA LGDLTGIKKH FSRKHGEKKW KCDKCSKKYA VQSDWKAHSK  180
TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAEERARGIP PPAAPNTFPT PAQTSLVPHL  240
HQQSIPHFNT SNVEINNILQ YPFSSSLKKE QQQQQSAYSN IINIDSSGGN FGMVRPPAGA  300
IACAELPPWL ASCPPSGLLL GPGPPHNHLS SSSSSPSILS TSTTAAAAGG ISPNPSQLGP  360
TSLTLPNFHS ASVPHMSATA LLQKAARMGS STSTATTKTA GHPTTIGSHQ IHVTNNTTSA  420
AGPNLDFNFS SSSRVHQQHM VVGGGGNFFQ EMMNYSMGGA HTTAGGFEED DDDDDGIASF  480
EDVLGGINSS KSAKGSEGMT RDFLGLRPLM SHTDLLSLAG FGHCINDDAA DRHQQQQHNS  540
HSHESQKPWQ GIIIHVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-35156217364Zinc finger protein JACKDAW
5b3h_F7e-35156217364Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008396
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021649999.11e-158protein indeterminate-domain 7-like
TrEMBLB9SN271e-152B9SN27_RICCO; Nucleic acid binding protein, putative
STRINGLus100083960.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.19e-97indeterminate(ID)-domain 7