PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10008383 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NF-YB | ||||||||
Protein Properties | Length: 102aa MW: 11452.8 Da PI: 5.755 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 132.3 | 1.5e-41 | 1 | 82 | 17 | 97 |
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseas.dkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 mk++lP nakisk+aket+q+cvsefisfvtseas +kc++e+rkt+ngdd++wa+++lGf+dy+ pl+ +l++yre+eg++ Lus10008383 1 MKQILPPNAKISKEAKETMQDCVSEFISFVTSEASeEKCRKERRKTLNGDDICWAMGSLGFDDYALPLRRFLQRYREVEGDS 82 9*********************************9459*****************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.3E-37 | 1 | 91 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.8E-20 | 1 | 56 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.29E-28 | 1 | 92 | IPR009072 | Histone-fold |
PRINTS | PR00615 | 5.2E-16 | 19 | 37 | No hit | No description |
PRINTS | PR00615 | 5.2E-16 | 39 | 57 | No hit | No description |
PRINTS | PR00615 | 5.2E-16 | 58 | 76 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MKQILPPNAK ISKEAKETMQ DCVSEFISFV TSEASEEKCR KERRKTLNGD DICWAMGSLG 60 FDDYALPLRR FLQRYREVEG DSRSATGNFD DTAGAPHPQH P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 1e-31 | 1 | 77 | 17 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 1e-31 | 1 | 77 | 17 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10008383 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012084241.1 | 5e-49 | nuclear transcription factor Y subunit B-4 | ||||
Swissprot | O82248 | 4e-40 | NFYB5_ARATH; Nuclear transcription factor Y subunit B-5 | ||||
TrEMBL | A0A067JYD0 | 1e-47 | A0A067JYD0_JATCU; Uncharacterized protein | ||||
STRING | Lus10008383 | 2e-71 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF805 | 32 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 2e-42 | nuclear factor Y, subunit B5 |
Link Out ? help Back to Top | |
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Phytozome | Lus10008383 |
Publications ? help Back to Top | |||
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