PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10008271

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 195aa MW: 22437.2 Da PI: 9.28

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10008271	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171	3.6e-53	16	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPt+eel+++yL+kkv+++k++l +vi+evd++k+ePwd+++ k+ + ++++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk ++s Lus10008271 16 VPPGFRFHPTEEELLHYYLRKKVASDKIDL-DVIREVDLNKLEPWDIQErcKIGSaQQNDWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKIIYSG 112 69**************************.9***********953433333667*********************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +gl+ktLvfy+grap+g+k+dW+mheyrl Lus10008271 113 NRRRIGLRKTLVFYQGRAPHGQKSDWIMHEYRL 145 *****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.68E-55	12	151	IPR003441	NAC domain
PROSITE profile	PS51005	52.275	16	161	IPR003441	NAC domain
Pfam	PF02365	9.3E-28	17	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MAGDHVNLSI NGQSKVPPGF RFHPTEEELL HYYLRKKVAS DKIDLDVIRE VDLNKLEPWD 60 IQERCKIGSA QQNDWYFFSH KDKKYPTGTR TNRATTAGFW KATGRDKIIY SGNRRRIGLR 120 KTLVFYQGRA PHGQKSDWIM HEYRLDDTDH STSLFSPLAR QQLLVYDDND IWTSFTKSSS 180 SPTSSSDPLC HLSV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-46	12	145	11	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening and lignification of sclerenchymatous fibers and secondary xylem vessels (tracheary elements). Seems to repress the secondary cell wall thickening of xylary fibers. May also regulate the secondary cell wall lignification of other tissues. Binds to and activates the promoter of MYB46. {ECO:0000269\|PubMed:17114348, ECO:0000269\|PubMed:17237351, ECO:0000269\|PubMed:17333250, ECO:0000269\|PubMed:17565617, ECO:0000269\|PubMed:17890373}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10008271

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011040589.1	9e-97	PREDICTED: NAC domain-containing protein 12-like
Swissprot	Q9LPI7	6e-93	NAC12_ARATH; NAC domain-containing protein 12
TrEMBL	A9PDI0	9e-95	A9PDI0_POPTR; NAC family protein
STRING	Lus10008271	1e-144	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF20219	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32770.1	4e-84	NAC domain containing protein 12

Link Out ? help Back to Top
Phytozome	Lus10008271

Publications ? help Back to Top
Zhao Q, et al. Pinoresinol reductase 1 impacts lignin distribution during secondary cell wall biosynthesis in Arabidopsis. Phytochemistry, 2015. 112: p. 170-8 [PMID:25107662] Fernández-Pérez F,Vivar T,Pomar F,Pedreño MA,Novo-Uzal E Peroxidase 4 is involved in syringyl lignin formation in Arabidopsis thaliana. J. Plant Physiol., 2015. 175: p. 86-94 [PMID:25506770] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Yuan Y,Teng Q,Zhong R,Ye ZH TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan. Plant Cell Physiol., 2016. 57(1): p. 35-45 [PMID:26556650] Huang J,Chen F,Wu S,Li J,Xu W Cotton GhMYB7 is predominantly expressed in developing fibers and regulates secondary cell wall biosynthesis in transgenic Arabidopsis. Sci China Life Sci, 2016. 59(2): p. 194-205 [PMID:26803299] Pascual MB, et al. PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine. Plant Biotechnol. J., 2018. 16(5): p. 1094-1104 [PMID:29055073]