PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008240
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 370aa    MW: 41207.3 Da    PI: 5.2425
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008240genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.13.7e-15181701128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee...v.ikevdiykv.ePwdLpkkvka.......eekewyfFskrdkkyatgkrknra......... 77 
                  lp+G+ F Pt+++lv++yL ++++g +l+ +    v +  +d+y + ePw+L  ++++       + +e+y  +k ++k+  gk+ +++         
  Lus10008240  18 LPVGCCFMPTEKQLVSHYLFNHISGLPLQNHPfcpVpVFFCDLYGSeEPWELWDRFQSqnssglsTGDEVYLITKLKHKKVAGKQLKQKkmagksnkq 115
                  799************************655333334355669998768****743333123333344599*999999999887766654468999999 PP

          NAM  78 .......tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         t+ g W+ +  d+e++  ++  vg++k + + + +++  ++  W++ ey++
  Lus10008240 116 nydrflgTSGGNWHRSDGDHEIKL-DRDFVGVRKKFSYKNLKSE--QHGLWLLSEYSI 170
                  ************************.9999*********955554..599*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-1513181IPR003441NAC domain
PROSITE profilePS5100517.41818189IPR003441NAC domain
PfamPF023651.2E-919170IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGEQQVPNHQ SSQTVDLLPV GCCFMPTEKQ LVSHYLFNHI SGLPLQNHPF CPVPVFFCDL  60
YGSEEPWELW DRFQSQNSSG LSTGDEVYLI TKLKHKKVAG KQLKQKKMAG KSNKQNYDRF  120
LGTSGGNWHR SDGDHEIKLD RDFVGVRKKF SYKNLKSEQH GLWLLSEYSI SYDGGKTCSE  180
DVICALKDHR KSDESATAKK RKFEQVNTTT TAGLPSSSKV PKLDDGATSS ATLMQMQTKE  240
KLPISFDFSI PSPPNVLDAS SVGDIIHNNE PLPTIPSHHS VDDTSGSESG HLDNNDIYID  300
YDSIWALLED DSEEPEDSAL LEQVQSSMIK LVQQVPLDLD LPILVFFTAA SAFMLRLAAT  360
EMHILNDLV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008240
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100082400.0(Linum usitatissimum)