PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008214
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 278aa    MW: 31412.5 Da    PI: 4.766
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008214genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-1976124355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+G+r+++ +g+W+AeIrdp++     r++lg+f +aeeAa+a+++ ++k++g
  Lus10008214  76 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNSAEEAARAYDKEALKIRG 124
                  9*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.66E-2275133IPR016177DNA-binding domain
SMARTSM003802.6E-3875138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-3275133IPR001471AP2/ERF domain
PROSITE profilePS5103224.05275132IPR001471AP2/ERF domain
PfamPF008475.5E-1276124IPR001471AP2/ERF domain
CDDcd000181.22E-3276133No hitNo description
PRINTSPR003672.6E-117687IPR001471AP2/ERF domain
PRINTSPR003672.6E-1198114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MCGGAIIADF IPRNRNRNLT AADLWPESFF SKASPFDTHD QPASFPAKRS HHTSSGGAES  60
DNNKGEPVKK QRKNLYRGIR QRPWGKWAAE IRDPRKGVRV WLGTFNSAEE AARAYDKEAL  120
KIRGKKAKVN FPNEESINHS NIHPPFQILQ SNNQHDPIIL DSYPESCNFG FDLNQIEDYP  180
SSTGWNNNNG GYAAGEFLGV KEEEEEEVVL ENKIHSSEES EQTSEVQKLS EELMAYENYM  240
KFYQIPYMEG ESVSRQSAAQ ESVVGDLWNF DDDVDSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2276132360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-21761381578Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008214
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002523125.17e-96ethylene-responsive transcription factor RAP2-2
TrEMBLB9SAV62e-94B9SAV6_RICCO; Uncharacterized protein
STRINGLus100082140.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.23e-42ERF family protein