PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10008200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 212aa MW: 24106.2 Da PI: 8.367 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 49.1 | 1.9e-15 | 18 | 170 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee...v.ikevdiykv.ePwdLpkkvka.......eekewyfFskrdkkyatgkrknra......... 77 lp+G+ F Pt+++lv++yL ++++g +l+ + v + +d+y + ePw+L ++++ + +++y +k ++k+ gk+ +++ Lus10008200 18 LPVGCCFMPTEKQLVSHYLFNHISGLPLQNHPfcpVpVFFCDLYGSeEPWELWDRFQSqnssglsTGDDVYLITKLKHKKVAGKQLKQKkmagssnkq 115 799************************655333334355669998768****7433331223333344789999999988887766664478999999 PP NAM 78 .......tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 t+ g W+ + d+e++ ++ vg++k + + + +++ ++ W++ ey++ Lus10008200 116 nydrflgTSGGNWHRSDGDHEIKL-DRDFVGVRKKFSYKNLKSE--QHGLWLLSEYSI 170 ************************.9999*********955554..599*******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.28E-15 | 13 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 16.968 | 18 | 189 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-10 | 19 | 170 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MGEQQVPNHQ SSQTVDLLPV GCCFMPTEKQ LVSHYLFNHI SGLPLQNHPF CPVPVFFCDL 60 YGSEEPWELW DRFQSQNSSG LSTGDDVYLI TKLKHKKVAG KQLKQKKMAG SSNKQNYDRF 120 LGTSGGNWHR SDGDHEIKLD RDFVGVRKKF SYKNLKSEQH GLWLLSEYSI SYDGGKTCSE 180 DVICILKDHR KSDESATTKK RKFEEVNATK I* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10008200 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ885710 | 2e-95 | HQ885710.1 Linum usitatissimum clone Contig1615 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10008200 | 1e-157 | (Linum usitatissimum) |
Link Out ? help Back to Top | |
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Phytozome | Lus10008200 |