PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008143
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Nin-like
Protein Properties Length: 929aa    MW: 101837 Da    PI: 5.3868
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008143genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.37.4e-29584634252
       RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++
  Lus10008143 584 EKTVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 634
                  799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.927566654IPR003035RWP-RK domain
PfamPF020423.3E-26586634IPR003035RWP-RK domain
SuperFamilySSF542774.58E-22821910No hitNo description
PROSITE profilePS5174521.936828910IPR000270PB1 domain
SMARTSM006661.2E-21828910IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2404.4E-24829910No hitNo description
PfamPF005648.2E-18829909IPR000270PB1 domain
CDDcd064077.24E-30829909No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 929 aa     Download sequence    Send to blast
MEYSFSPKVN GDEFSAEIAS PVDGHPRNSI LGDPGDKFLE LMNLDTYHGW CNGSSAMEHM  60
FASNGLSSLQ PFPLGSFDTL NLAEQPSYLF PNESDGAGTS HDCGDKITCE QNDSQFVYSL  120
RLSAGNGFVS NGSNQQKNII EEDVNCLVSC PVRCSLDEKM LKALSFLREC SGDGILAQVW  180
VPVRQGDQYV LTTSNQPYLL DKILAGYREV SRTFTFSADL QSGLPLGLPG RVFVSKVPEW  240
TSNIIHYSKA EYVRVNHAVD HEVRGSVALP ILEPSNMSCC AVLELVTIKE KSDFDSEMEN  300
ICNALQAVNL RSTLPPRLSQ FLSGDQQAAL AEIRDVLQAV CHAHKLPLAL TWIPCNYTEG  360
SPDKIERVCV REGDSRPTGK YVLCIEDAAC YVNDISMQGF VHVCVEHYIE EGQGISGKAL  420
QSNHPYFIPD VKTYDISEYP LVHHTRKYGL NAAVAIRLRS TYTGDHDYIL ELFLPVNITG  480
SQEQQLLLNN LSSTMQKICR SLRTVSDAEL AAGVGNGLGY QKESIPIFPE ISISERNSNS  540
LLSSVLNTAG KMDFNASSSR MNRTESRAMA GSRKQLDKKR STGEKTVSLS VLQQYFSGSL  600
KDAAKSIGVC PTTLKRICRQ HGISRWPSRK INKVNRSLRK IQIVLDSVQG VEGGLKFDPG  660
TGGFMAAGDM LDEFDSDGRT LFPNNNIPAQ HSEPLAECVA AEGSTSTDKV DDSSTATVWK  720
VAKKTSSPLV YASEDSKSQL FSFHEATSPP CWFAGDAEAE KTSSQHRSWS SSSLAGGDEN  780
NTIDHDQNVC SSSSHGSESP AMPGCSSSSQ RLKEGRHPRS QGHSSGWKIT MKATYKEDTI  840
RFKFESRAGC FQLYEEVGKR FKLQTGTFQL KYLDDEEEWV LLTSDSDLQE CCEILDYTGK  900
ESVKLAVQDT PFVTGSSGSS NCFLAGSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008143
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021692595.10.0protein NLP8-like
RefseqXP_021692596.10.0protein NLP8-like
RefseqXP_021692597.10.0protein NLP8-like
TrEMBLA0A067L9J40.0A0A067L9J4_JATCU; Uncharacterized protein
STRINGLus100081430.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34643465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43500.20.0Nin-like family protein