PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10008066 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | LSD | ||||||||
Protein Properties | Length: 225aa MW: 24370.3 Da PI: 8.2294 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.9 | 6.8e-13 | 59 | 83 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA++V+CalC+t+ Lus10008066 59 CNGCRSVLLYPRGASNVCCALCNTI 83 ***********************97 PP | |||||||
2 | zf-LSD1 | 49.2 | 8.7e-16 | 98 | 122 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+tV Lus10008066 98 CGGCRTLLMYTRGATSVRCSCCHTV 122 ************************9 PP | |||||||
3 | zf-LSD1 | 50 | 4.9e-16 | 136 | 160 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C++V Lus10008066 136 CGNCRTTLMYPYGAPSVKCAVCHFV 160 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.90.10.10 | 5.2E-4 | 54 | 159 | No hit | No description |
TIGRFAMs | TIGR01053 | 4.3E-12 | 56 | 86 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.9E-11 | 59 | 83 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.7E-17 | 95 | 124 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.7E-13 | 98 | 122 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 8.3E-13 | 133 | 163 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.9E-14 | 136 | 160 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MEGMSCKPVL ALFQRYDYHI ICRQSRCSYI HNYCLDDFCY IVLTYVYISN AAMQSQLVCN 60 GCRSVLLYPR GASNVCCALC NTITSVPPPG MDMSQLICGG CRTLLMYTRG ATSVRCSCCH 120 TVNLAPVSNQ VAHINCGNCR TTLMYPYGAP SVKCAVCHFV TNVTISNVRV QQRPNGQGAM 180 VPSTSSAMPQ SQTQTVVVEN PMSVDESGKL VSNVVVGVTT TDKK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10008066 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012075549.1 | 8e-99 | protein LSD1 isoform X1 | ||||
Swissprot | Q2QMB3 | 7e-75 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | G7L9L5 | 3e-98 | G7L9L5_MEDTR; LSD1-type zinc finger protein | ||||
STRING | Lus10008066 | 1e-163 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4027 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 3e-71 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10008066 |
Publications ? help Back to Top | |||
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