PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007941
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 449aa    MW: 48764 Da    PI: 8.5455
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007941genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57.3e-114871427
                 ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                 + C +++rtG+C yG+rC+++H++
  Lus10007941 48 ATCVYYMRTGFCGYGARCRYNHPR 71
                 78********************96 PP
2zf-CCCH38.12.7e-1292116327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C+f+++tGtCk+G++CkF+H++
  Lus10007941  92 EPQCQFYLKTGTCKFGASCKFHHPK 116
                  688********************96 PP
3zf-CCCH36.58.1e-12137162227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++ +C+++++tG+Ck+G +CkF+H++
  Lus10007941 137 GETECSYYLQTGHCKFGLNCKFHHPQ 162
                  7789********************97 PP
4zf-CCCH331e-10280302426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                   +C++++rtG CkyG  C+++H+
  Lus10007941 280 LECQYYLRTGDCKYGLACRYHHP 302
                  58********************8 PP
5zf-CCCH41.42.4e-13323348126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ++t +C+f++++G+Ck+G++CkF H+
  Lus10007941 323 PGTQPCSFYMQNGYCKFGSTCKFDHP 348
                  689**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.3E-64471IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1594472IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-64672IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-84871IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-65071IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-489116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.33889117IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-1092116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-693117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-495116IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-6135162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.028135163IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-9137162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6138163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4141161IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-4276303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.141276304IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-8280302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5281304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4282302IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-8322349IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-7322349IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.732322350IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-11323348IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-6325347IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MELYSHNQSQ SGQQTDWTPA GPETGLEDSM WRLGLTSNEP YPERLGVATC VYYMRTGFCG  60
YGARCRYNHP RDRAAVEEAV RATGLYPERA GEPQCQFYLK TGTCKFGASC KFHHPKHRGG  120
SLSNASLNTH GYPLRPGETE CSYYLQTGHC KFGLNCKFHH PQPADSASAP QFYQQVQSPS  180
TNLRVRPPIL PGSYMQGTYG PPMLLPPGVV PIPGWSPYSA PVSPVLSPGA QTATSLYGVT  240
QLSATSPGPA RPYPSLLSFG SPSRSSTQKE PRFPERPGEL ECQYYLRTGD CKYGLACRYH  300
HPHDRAVPVS DSMLNPLGLP LRPGTQPCSF YMQNGYCKFG STCKFDHPVG GAVGYTPPTA  360
ASLIDMPPVA PYLVGSLLAT LAPSSPSYEL RPELMSAPRN ASNSSVGLIF SQTGSLPPFT  420
DLQLSSQTSL PSTSSRSTRH GVEMRRSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007941
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021608726.10.0zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2C9WP710.0A0A2C9WP71_MANES; Uncharacterized protein
STRINGLus100079410.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-157C3H family protein