PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10007914

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

MYB_related

Protein Properties

Length: 354aa MW: 38538 Da PI: 7.0252

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10007914	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.3	1.8e-13	80	124	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Lus10007914 80 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 124 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.12E-16	74	130	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.408	75	129	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.6E-18	78	127	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.3E-6	78	130	IPR009057	Homeodomain-like
SMART	SM00717	5.3E-11	79	127	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-11	80	124	IPR001005	SANT/Myb domain
CDD	cd00167	2.36E-8	82	125	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MVSVNPNPAP GFFFFDSLEN PIDSPILPSG VRSLPPSSSS VAAAAAATDT ASTSANNNTL 60 SFGEDQSKKI RKPYTITKSR ESWTEQEHDK FLEALQLFDR DWKKIEAFVG SKTVIQIRSH 120 AQKYFLKVQK SGTSEHVPPP RPKRKAAHPY PQKAPKTAAP VVHQVTEVFP SPSASMENGY 180 VYQQPDSSSV LATPMSAGGA LSSWNYYPLP QASLSQVIPD ETANVGTTTA SNCCYSSSND 240 STPKTWQGHQ TVRRGDQNEA ARVMPDFAQV YSFIGSVFDP NASGHVEKLK QMDPINLETV 300 MLLMRNLSFN LTSPEFEDHQ RKVLASHDPA TERATGYGNI RSDETTGSAI PAV*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MVSVNPNPAP GFFFFDSLEN PIDSPILPSG VRSLPPSSSS VAAAAAATDT ASTSANNNTL  60
SFGEDQSKKI RKPYTITKSR ESWTEQEHDK FLEALQLFDR DWKKIEAFVG SKTVIQIRSH  120
AQKYFLKVQK SGTSEHVPPP RPKRKAAHPY PQKAPKTAAP VVHQVTEVFP SPSASMENGY  180
VYQQPDSSSV LATPMSAGGA LSSWNYYPLP QASLSQVIPD ETANVGTTTA SNCCYSSSND  240
STPKTWQGHQ TVRRGDQNEA ARVMPDFAQV YSFIGSVFDP NASGHVEKLK QMDPINLETV  300
MLLMRNLSFN LTSPEFEDHQ RKVLASHDPA TERATGYGNI RSDETTGSAI PAV*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10007914

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021644126.1	1e-154	protein REVEILLE 6-like isoform X1
Swissprot	Q8H0W3	1e-100	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	B9I8P3	1e-149	B9I8P3_POPTR; Uncharacterized protein
STRING	Lus10007914	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1119	33	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.2	7e-87	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Lus10007914

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]