PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10007841 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 27171.1 Da PI: 5.1348 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 5.9e-19 | 153 | 203 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdps k r +lg+f+t +eAa+a+++a+ +l+g Lus10007841 153 RYRGVRQRP-WGKYAAEIRDPSR--KGSRLWLGTFDTSKEAARAYDRAAFELRG 203 69*******.**********854..34*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.5E-36 | 153 | 217 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.106 | 153 | 211 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-23 | 153 | 212 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-32 | 153 | 212 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.8E-14 | 153 | 203 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.4E-11 | 154 | 165 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.50E-25 | 159 | 213 | No hit | No description |
PRINTS | PR00367 | 9.4E-11 | 177 | 193 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MAEAIGAYSA FDLVVDNYQI FLDDCLFPAG VESSSSSVSC DSAISVSDYY YLDDDQVHLN 60 RNELDLETNN RPIVDLSEEK RGIVGFKRDS LGFSKSEQKF KTESSKMEPE FELIELKTTV 120 PAPSRDFVFE FGSEPKTDSR PETVRTGRGD GGRYRGVRQR PWGKYAAEIR DPSRKGSRLW 180 LGTFDTSKEA ARAYDRAAFE LRGRKAILNF PADAGKYKTD AGKDEVEAAW ERKRQRGGEG 240 GK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-26 | 147 | 213 | 5 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10007841 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | O80341 | 6e-32 | EF102_ARATH; Ethylene-responsive transcription factor 5 | ||||
STRING | Lus10007841 | 1e-177 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 2e-27 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10007841 |
Publications ? help Back to Top | |||
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