PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10007774

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Dof

Protein Properties

Length: 279aa MW: 29929.4 Da PI: 8.2552

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10007774	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.1	7.9e-38	53	111	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e+ +kcprC+s+ntkfCyynnysl+qPryfCk+CrryWt+GGalr+vP+Ggg+rk+ +s Lus10007774 53 EAVIKCPRCQSSNTKFCYYNNYSLTQPRYFCKTCRRYWTRGGALRDVPIGGGSRKSAAS 111 6789***************************************************9766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-23	48	104	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-33	55	109	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.062	56	110	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	58	94	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MVKKYPNRQD KKDGIVVGSE EALSYYAATP PPPPHATAAA QSRKAVLSAA PPEAVIKCPR 60 CQSSNTKFCY YNNYSLTQPR YFCKTCRRYW TRGGALRDVP IGGGSRKSAA SKHSSSSADR 120 SLLPAASKKQ LVTTTADVAG QDQNLAYNPP PRAAYKFSEV VYQFLNPNYY SMVPLLPNHN 180 NGDGGRGDEL GMMKPPPPAL CYPPFHGGGF EIRDEDDDHE ESDVGCNEER VLFPIHDYVK 240 PAVTINGATV APAGTSTTTA AEFWNGVFGG GGGGGSTW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10007774

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10007774	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4145	32	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	1e-30	DNA binding with one finger 2.4

Link Out ? help Back to Top
Phytozome	Lus10007774