PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10007650

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

HD-ZIP

Protein Properties

Length: 732aa MW: 80344.8 Da PI: 5.7257

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10007650	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.1	1.7e-19	62	117	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+ q+k+WFqN+R+++k Lus10007650 62 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELGRELGLEPLQIKFWFQNKRTQMK 117 688999***********************************************998 PP
2	START	216.7	7.9e-68	248	467	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS START 1 elaeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 ela +a++elv++a+a+ep+W+ + e +n++e+l++f+++ + ++ea+r+s+vv+m++++lve+l+d++ qW++ + +a+tl+v+s+ Lus10007650 248 ELAVAAMEELVRMAQAGEPLWKNVKngEALNEEEYLRSFPRGIGpkplgLRSEASRESAVVIMNHVNLVEILMDVN-QWSTLFCgivsRAMTLDVLST 344 57899**********************************999****************************.*999999****** PP T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS START 88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178 g galq+m+ae+q++sp vp R+ +fvRy++q+++ +w++vdvS+ds p+ +s R ++pSg+li++++ng+skvtwveh++++++++h Lus10007650 345 GvagnynGALQVMTAEFQVPSPFVPsREHYFVRYCKQQSDSTWAVVDVSLDSLLRPN-PPSKNR--RRPSGCLIQELPNGYSKVTWVEHIEVDDASVH 439 *************************************************9998.577777..99************************** PP HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 179 wllrslvksglaegaktwvatlqrqcek 206 ++++s+v+sgla+gak+wvatl+rqce+ Lus10007650 440 NMYKSMVHSGLAFGAKRWVATLDRQCER 467 ************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.01E-19	44	119	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-22	46	121	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.552	59	119	IPR001356	Homeobox domain
SMART	SM00389	2.9E-18	60	123	IPR001356	Homeobox domain
CDD	cd00086	3.28E-18	62	120	No hit	No description
Pfam	PF00046	3.5E-17	62	117	IPR001356	Homeobox domain
PROSITE profile	PS50848	44.084	239	470	IPR002913	START domain
SuperFamily	SSF55961	4.17E-36	239	468	No hit	No description
CDD	cd08875	2.70E-123	243	466	No hit	No description
SMART	SM00234	1.8E-65	248	467	IPR002913	START domain
Pfam	PF01852	8.7E-58	249	467	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	2.2E-7	342	466	IPR023393	START-like domain
SuperFamily	SSF55961	5.5E-24	487	723	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence Send to blast
MFQPNMFDNP HIFEMAEMGK PSRDFFDDYD TKSGTETIGI GGAPSGDDDQ DGSPSQQPPN 60 KKKRYHRHTQ HQIQEMESFF KECPHPDDKQ RKELGRELGL EPLQIKFWFQ NKRTQMKAQH 120 ERHENSILKA ENDKLRLENN RYKEALSNAS CPNCGGPAAL GEMSFDEQQL RIENARLRDE 180 IDRISAIAAK YVGKPITSFS HQSSLELGTA TFGGSHSSFG EMYGPATDFL RSIATGGPTE 240 ADKPMIVELA VAAMEELVRM AQAGEPLWKN VKNGEALNEE EYLRSFPRGI GPKPLGLRSE 300 ASRESAVVIM NHVNLVEILM DVNQWSTLFC GIVSRAMTLD VLSTGVAGNY NGALQVMTAE 360 FQVPSPFVPS REHYFVRYCK QQSDSTWAVV DVSLDSLLRP NPPSKNRRRP SGCLIQELPN 420 GYSKVTWVEH IEVDDASVHN MYKSMVHSGL AFGAKRWVAT LDRQCERLVS SMAVNIPAGD 480 LCVMTGPEGR KSILKLAERM VMSFCTGVGA SAAHAWTTLS PSGSDDVRVM TRKSMDDPGR 540 PPGIVLSAAT SFWISVPPTT VFDFLRDENH RSEWDILSNG GQVQEIAHIA NGRDPGNCVS 600 LLRVNSGNSS QSNMLILQES STDSTGSYVI YAPVDIAAMN IVLGGGDPDY VALLPSGFAI 660 LHDGPPMKSD VDDKGVIKHM DSGGSLLTVA FQILVDSIPT AKLSLNSVTT VNSLIKCTVE 720 RIKEAVDEKS G*

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence Send to blast

MFQPNMFDNP HIFEMAEMGK PSRDFFDDYD TKSGTETIGI GGAPSGDDDQ DGSPSQQPPN  60
KKKRYHRHTQ HQIQEMESFF KECPHPDDKQ RKELGRELGL EPLQIKFWFQ NKRTQMKAQH  120
ERHENSILKA ENDKLRLENN RYKEALSNAS CPNCGGPAAL GEMSFDEQQL RIENARLRDE  180
IDRISAIAAK YVGKPITSFS HQSSLELGTA TFGGSHSSFG EMYGPATDFL RSIATGGPTE  240
ADKPMIVELA VAAMEELVRM AQAGEPLWKN VKNGEALNEE EYLRSFPRGI GPKPLGLRSE  300
ASRESAVVIM NHVNLVEILM DVNQWSTLFC GIVSRAMTLD VLSTGVAGNY NGALQVMTAE  360
FQVPSPFVPS REHYFVRYCK QQSDSTWAVV DVSLDSLLRP NPPSKNRRRP SGCLIQELPN  420
GYSKVTWVEH IEVDDASVHN MYKSMVHSGL AFGAKRWVAT LDRQCERLVS SMAVNIPAGD  480
LCVMTGPEGR KSILKLAERM VMSFCTGVGA SAAHAWTTLS PSGSDDVRVM TRKSMDDPGR  540
PPGIVLSAAT SFWISVPPTT VFDFLRDENH RSEWDILSNG GQVQEIAHIA NGRDPGNCVS  600
LLRVNSGNSS QSNMLILQES STDSTGSYVI YAPVDIAAMN IVLGGGDPDY VALLPSGFAI  660
LHDGPPMKSD VDDKGVIKHM DSGGSLLTVA FQILVDSIPT AKLSLNSVTT VNSLIKCTVE  720
RIKEAVDEKS G*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269\|PubMed:12505995}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10007650

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007026002.1	0.0	PREDICTED: homeobox-leucine zipper protein MERISTEM L1
Refseq	XP_007026003.1	0.0	PREDICTED: homeobox-leucine zipper protein MERISTEM L1
Refseq	XP_007026004.1	0.0	PREDICTED: homeobox-leucine zipper protein MERISTEM L1
Swissprot	Q93V99	0.0	PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBL	A0A061GGE7	0.0	A0A061GGE7_THECC; Protodermal factor 2 isoform 1
STRING	Lus10007650	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1508	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	0.0	protodermal factor 2

Link Out ? help Back to Top
Phytozome	Lus10007650

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]