PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007493
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 647aa    MW: 70839.8 Da    PI: 7.1776
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007493genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-07253273526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f++ G C+ Gd+C +aHg
  Lus10007493 253 PCPEFRK-GSCQKGDSCEYAHG 273
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.33E-1360138IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.26563138IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00116393IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.3E-1364141IPR020683Ankyrin repeat-containing domain
PfamPF136371.1E-864122No hitNo description
CDDcd002044.09E-1265138No hitNo description
SMARTSM002480.09598130IPR002110Ankyrin repeat
PROSITE profilePS500889.91298133IPR002110Ankyrin repeat
SMARTSM003564.0E-5248274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544248275IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-5253273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4253274IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.869283307IPR000571Zinc finger, CCCH-type
SMARTSM0035637283306IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MVVEQSSFRQ KASNLGRCSV LLELSAIGDL VSFRSEVEGK GLDVDEASCW YGRRIGSRKM  60
GFEERTPLMI AAMFGSTDVL KYIIGTGKVD VNRACGSDMV TALHCAVAGG SNSSVAIVKM  120
LLDADADSNC LDSNGNKPED LFAPSMKCPC NSRKKLIESL LKGESLSEDE EEKLIALPQF  180
AKEGIERKEY PIDVSLPDIN TGVYGSDEFR MYSFKVKPCS RAYSHDWTEC PFVHPGENAR  240
RRDLRKYPYS CVPCPEFRKG SCQKGDSCEY AHGVFESWLH PAQYRTRLCK DETGCARKVC  300
FFAHKPEELR PVYASTGSAM PSPRSSGSAA SAMDMASLSP LSLGTTSLPT AVSTPPMSPH  360
ASSSPKSGGL WQNKINFTPP ALQLPGSRLK TAMSARDFDL ELELLRFENH NQMQQQQLID  420
EITGLSSSPT RWSQDFNRMG EMKPTNLDDA FRSLDPSLFS PMQQQSPTGM QIRQNMNQLR  480
SSFPSNLSSS PVRKQQGGGS YGFESSAAAA MNSRSSAFSS RSQSFIDRGA VSVNRLGVTA  540
AANSVSMMSS NWGSPGGKLD WGMQGDELNK LKRSASFGFR GGNNNNSPVT RPADVAMSNG  600
QEPDISWVNS LVKDAPENRH SHVNGVRESI PPWMEQMYME QEQMVA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007493
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021670068.10.0zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A067LJF00.0A0A067LJF0_JATCU; Uncharacterized protein
STRINGLus100074930.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-176C3H family protein