PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007440
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARF
Protein Properties Length: 684aa    MW: 75920.5 Da    PI: 6.1562
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007440genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.16.8e-23128229199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++ +++a+++       +++    ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +++e
  Lus10007440 128 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGESGE 221
                  99****************************964333..4459************************************************..44999* PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+v+r+
  Lus10007440 222 LRVGVRRH 229
                  ******96 PP
2Auxin_resp111.11.1e-36254336183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha++t++ F+v+Y+Pr+s+seF+v+v+k+++a+++k+svGmRfkm+fe+e+++err+sGt+vgv d  ++ W++S WrsLk
  Lus10007440 254 ASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAVNHKLSVGMRFKMRFEGEEVPERRFSGTIVGVGDDLSSGWSDSDWRSLK 336
                  789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.62E-44117257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-41125243IPR015300DNA-binding pseudobarrel domain
CDDcd100172.53E-20126228No hitNo description
PROSITE profilePS5086311.335128230IPR003340B3 DNA binding domain
SMARTSM010196.8E-22128230IPR003340B3 DNA binding domain
PfamPF023621.1E-20128229IPR003340B3 DNA binding domain
PfamPF065077.3E-35254336IPR010525Auxin response factor
PfamPF023094.6E-12522637IPR033389AUX/IAA domain
PROSITE profilePS5174527.702551644IPR000270PB1 domain
SuperFamilySSF542772.16E-12554628No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MAFTVTSHSS GAHLHPGACN DALYKELWHA CAGPLVTLPR EGERVYYFPQ GHMEQLEASM  60
QQGVEHQMPM FNLPSKILCK VVNVQRKAEA DTDEVYAQVT LLPEPDQSEI TSPDTPLPEP  120
ERCTVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMS QQPPWQELVA TDLHGNEWHF  180
RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRGESG ELRVGVRRHM RQQTNMPSSV  240
ISSQSMHLGV LATASHAIAT GTLFSVFYKP RTSRSEFIVS VNKYLEAVNH KLSVGMRFKM  300
RFEGEEVPER RFSGTIVGVG DDLSSGWSDS DWRSLKVQWD EPTSIWRPDR VSSWELEPLI  360
ATTPSNSQPM NRNNKRVRPS VIPSPSPDLN GMWKAPVDSS GHSQVDSRRG CLYPSPTYPA  420
KTKASSLGFS GNSPLSAVST NPSMYWPKQV EGVTESLSPA VNRSVGDMKQ GTGNGYRLFG  480
IQLVDNSNME ETSGAVSQPV RVDCPILSVD AESDQQSEPS NVFRCEIASA SYDPEKSSLR  540
SPQELHSRQV RSCTKVHMQG IAVGRAVDLT RFECYDDLLR KLEDMFDIQG ELRGCTKKWQ  600
VVYTDDEDDM MMVGDDPWHE FCSMVRKIFI YTSEEVKKMS AKVKLPVRED MKTGSGCDVD  660
VDGAAAAAAA NMEDQSSIIG SES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.063594355Auxin response factor 1
4ldw_A0.063594355Auxin response factor 1
4ldw_B0.063594355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007440
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021639534.10.0auxin response factor 1-like isoform X2
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A067LDD20.0A0A067LDD2_JATCU; Auxin response factor
STRINGLus100074400.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68022638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]