PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10007409 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 489aa MW: 52693.6 Da PI: 9.4382 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 2.9e-05 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Lus10007409 6 FICEICNKGFQRDQNLQLHRRGH 28 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.3 | 0.0011 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Lus10007409 83 WKCDKCSKKYAVQSDWKAHSKIC 105 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 5 | 28 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.1E-7 | 5 | 28 | No hit | No description |
Pfam | PF12171 | 5.8E-5 | 6 | 28 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.845 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.022 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 48 | 78 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.2E-4 | 71 | 104 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.1E-7 | 78 | 103 | No hit | No description |
SMART | SM00355 | 150 | 83 | 103 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 489 aa Download sequence Send to blast |
MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSKT EVVKRKVYIC PEKTCVHHDP 60 ARALGDLTGI KKHFSRKHGE KKWKCDKCSK KYAVQSDWKA HSKICGTREY RCDCGTLFSR 120 KDSFITHRAF CDALAEESAR FTSVSAANFR NDLMNPSLLQ HQSGAGLSQF STMFRPELSA 180 GLESNVEGGN NIMQNPRNNK VGNNNNINNN MPMWLDPMAT SAGGSGGGSS NNNNGQNPFG 240 FPQELVQPNM FGSINQWAPL SNNNNNNKYQ EGAAYGSTGG SLSGMGLTRG TIMKEEEENN 300 NNKRDMLLSS SSETALYSHH HHHQAAATAH MSATALLQKA AQMGSTRSSN ANAGTGGAGL 360 MMTPSLSAMM PGFGNNNNNK SSSSGESLKF LSGGNQLNEL MSSVSSSTTE RVIMSEFGGG 420 EAAAGGFTRD FLGVGAGENN EGGRMPLMLQ QELARFAAMG SSSSNNNSAA AAMELQPNFR 480 SSSSAGLN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 7e-37 | 79 | 145 | 3 | 69 | Zinc finger protein JACKDAW |
5b3h_F | 7e-37 | 79 | 145 | 3 | 69 | Zinc finger protein JACKDAW |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10007409 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021628439.1 | 1e-149 | protein indeterminate-domain 9-like | ||||
Refseq | XP_021628440.1 | 1e-149 | protein indeterminate-domain 9-like | ||||
Refseq | XP_021628441.1 | 1e-149 | protein indeterminate-domain 9-like | ||||
TrEMBL | A0A251JWC5 | 1e-148 | A0A251JWC5_MANES; Uncharacterized protein | ||||
STRING | Lus10007409 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G45260.1 | 6e-89 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10007409 |