PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10007386 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ARF | ||||||||
Protein Properties | Length: 821aa MW: 91315.8 Da PI: 6.6289 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.3 | 2.9e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ + Lus10007386 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQ 220 99*****************************8544444..48************************************************..888999 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+++++r+ Lus10007386 221 LLLGIRRA 228 9***9986 PP | |||||||
2 | Auxin_resp | 114.1 | 1.3e-37 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v++nPras+ eFv++++k++ka++ +++svGmRf+m fete+ss rr +Gt++g+sdldpvrWpnS+Wrs+k Lus10007386 253 AAHAAATNSCFTVFFNPRASPCEFVISLSKYVKAVYhTRISVGMRFRMLFETEESSVRRHMGTITGISDLDPVRWPNSHWRSVK 336 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.22E-49 | 111 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-41 | 120 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.46E-21 | 126 | 227 | No hit | No description |
SMART | SM01019 | 1.1E-23 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-21 | 127 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.026 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.3E-32 | 253 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.1E-7 | 698 | 787 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 3.07E-6 | 699 | 775 | No hit | No description |
PROSITE profile | PS51745 | 23.719 | 701 | 785 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 821 aa Download sequence Send to blast |
MKLSTSGLSQ QGQEGENKCL NSELWHACAG PLVSLPTVGS RVVYFPQGHS EQVVATTNKE 60 IDGQIPNYPS LPPQLICQLH NLTMHADVET DEVYAQMTLQ PLTEEEQKDT FLPMELGMPS 120 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDVEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRAIR PQTVMPSSVL 240 SSDSMHIGLL AAAAHAAATN SCFTVFFNPR ASPCEFVISL SKYVKAVYHT RISVGMRFRM 300 LFETEESSVR RHMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSLFP FRLKRPWHPG SSAFPDPRDE NANSLTWMRG GPGDGLPSMN FQAINMLPWM 420 QQQRVDPSLL RNDQSQWYQA MLAASLQSAG NGDPMRQQFM QFQHPLHYQQ QPTTNYPILQ 480 QAIQQSVPHN ILSSHNQVSI DSLPQQILQQ QQEPNYNDSI PRQNDQLQGG PSSVHSPNFS 540 KTNFIDSSTK FIGGSTGTVQ MLGSLCTEGG GNLLDLTRAV PSSTAEHLNQ ETWVPKYSHG 600 KVNAFTTPMT HQHQFHDKDH APVPKPGNCS TEALNPNTFG MTIDSSGLLL PTTVPRVATT 660 SSDPDVSSMP LSETGFQNSL YSSSEFLPGT GGQVEALNAG PIFVKVYKSG SVGRSLDISR 720 FSSYHQLREE LAQMFGIEGK LENPHRSGWQ LVFVDKEDDV LLLGDGPWDA FVNNVWYIKI 780 LSPEDVVKMG HQGVESFSPN TRQRTISSGE PDFGSGSLRY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-157 | 11 | 357 | 41 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10007386 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012074114.1 | 0.0 | auxin response factor 8 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A067KWZ2 | 0.0 | A0A067KWZ2_JATCU; Auxin response factor | ||||
STRING | Lus10007386 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4958 | 28 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |
Link Out ? help Back to Top | |
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Phytozome | Lus10007386 |