PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10007377

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 678aa MW: 74680.2 Da PI: 6.2834

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10007377	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.4	9.4e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeelv +yLk k++g+k+el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v s + Lus10007377 6 LPPGFRFHPTDEELVAYYLKSKINGQKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDMEWYFFSPRDRKYPNGSRTNRATKTGYWKATGKDRKVNS-Q 101 79**************************.99***********6435566888**********************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + vg+kktLv+y+grap+g ++dWvmheyrl Lus10007377 102 MRSVGMKKTLVYYRGRAPHGARSDWVMHEYRL 133 999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-62	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	61.169	6	157	IPR003441	NAC domain
Pfam	PF02365	2.3E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKSKING QKIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DMEWYFFSPR DRKYPNGSRT NRATKTGYWK ATGKDRKVNS QMRSVGMKKT LVYYRGRAPH 120 GARSDWVMHE YRLDDRECDS PASGLQDAYA LCRVFKKTAA PTPPKVHVEG YSSTMNNHHP 180 SQLQVASQHN NERSSSSTIY SDGGSASYVA SFGNGGAYVD TCSQGNTGFS RVNDNVVDNR 240 GTTWTIGATS SSSMDPFSFT PTHFPSSCYG SSSIPNYPPS KVDIALECAR LQHRFTLPPL 300 EVEDYPNKRM MSTMMMNDSS SSHHHNNQGS DLLQEILSVA HASRELINNN TNDRYNSFQA 360 AGFGGGVNDF SAVADNNDFT FTSSTSAAGN NRAADMSISS NDMSSSWLDN SRSVEIGDDI 420 VDDQFMGSDR MVENLRWLGM SNDELHQNFM NEHRIVPIAS ISSFTSMNSH SDQVEAGDNQ 480 LDHNDGLGFI NDSDDVYNSL EFIVEDEPSA NAQADVVASS PSFEVVHEEV RVNQGLFIST 540 RQAADTFFHQ LVPSQTVKIQ LNPSASAVHL RQFFTVQKKQ QRPNTVINSY GTGVINLVSL 600 IIVAILMHCL SLKEENVAGK FDGSSSCLKS PVISIHGGGG DRKGSKWVGV VLKKFGILLT 660 ISFALCTMLV NRVVLAT*

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV AYYLKSKING QKIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DMEWYFFSPR DRKYPNGSRT NRATKTGYWK ATGKDRKVNS QMRSVGMKKT LVYYRGRAPH  120
GARSDWVMHE YRLDDRECDS PASGLQDAYA LCRVFKKTAA PTPPKVHVEG YSSTMNNHHP  180
SQLQVASQHN NERSSSSTIY SDGGSASYVA SFGNGGAYVD TCSQGNTGFS RVNDNVVDNR  240
GTTWTIGATS SSSMDPFSFT PTHFPSSCYG SSSIPNYPPS KVDIALECAR LQHRFTLPPL  300
EVEDYPNKRM MSTMMMNDSS SSHHHNNQGS DLLQEILSVA HASRELINNN TNDRYNSFQA  360
AGFGGGVNDF SAVADNNDFT FTSSTSAAGN NRAADMSISS NDMSSSWLDN SRSVEIGDDI  420
VDDQFMGSDR MVENLRWLGM SNDELHQNFM NEHRIVPIAS ISSFTSMNSH SDQVEAGDNQ  480
LDHNDGLGFI NDSDDVYNSL EFIVEDEPSA NAQADVVASS PSFEVVHEEV RVNQGLFIST  540
RQAADTFFHQ LVPSQTVKIQ LNPSASAVHL RQFFTVQKKQ QRPNTVINSY GTGVINLVSL  600
IIVAILMHCL SLKEENVAGK FDGSSSCLKS PVISIHGGGG DRKGSKWVGV VLKKFGILLT  660
ISFALCTMLV NRVVLAT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-57	2	157	11	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10007377

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ887305	1e-102	HQ887305.1 Linum usitatissimum clone GMU2AYZ01BJ00F microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015579297.1	0.0	NAC domain-containing protein 86
Refseq	XP_025014445.1	0.0	NAC domain-containing protein 86
Swissprot	A4VCM0	1e-103	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	B9SKR0	0.0	B9SKR0_RICCO; Uncharacterized protein
STRING	Lus10007377	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4421	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-134	NAC domain containing protein 28

Link Out ? help Back to Top
Phytozome	Lus10007377

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]