PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007326
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 268aa    MW: 29132.4 Da    PI: 6.8518
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007326genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY54.23e-171111482259
                  EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY  22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   sYYrCts++C+vkk++ers +dp++v++tYeg+Hnh+
  Lus10007326 111 GSYYRCTSQKCRVKKRIERSFQDPSTVITTYEGQHNHH 148
                  59***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007746.5E-11103149IPR003657WRKY domain
PROSITE profilePS5081117.844106150IPR003657WRKY domain
PfamPF031066.6E-12107148IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.2E-15107150IPR003657WRKY domain
SuperFamilySSF1182902.22E-13108150IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MITTPPPDYS NYNGRMTSTS SFATTTTTTT ISTPGGGGDH YCGSSNNIIL PAAGNGGGSP  60
SSSTPNSSIS SSSNDAAAAH KIITKKEENK DNYQSCENHD DDDDDGKSRK GSYYRCTSQK  120
CRVKKRIERS FQDPSTVITT YEGQHNHHSP ATLRGNAAAA AFFSTNHHHH LLSSSSPSNI  180
PPDLLTHHLT PNFMTTMNHH HQSSTALNID PTNDPSHPIS TNDQDDHSPM FHTMGQHQQN  240
QQVHVPDYGL LQDLVPSFLH NKQHHQP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007326
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100073260.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.18e-23WRKY DNA-binding protein 71