PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10007305 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WRKY | ||||||||
Protein Properties | Length: 193aa MW: 20984.5 Da PI: 9.717 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.8 | 6.8e-31 | 86 | 144 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp++++itY+++Hnh+ Lus10007305 86 ADSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTMLVITYSSDHNHP 144 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-31 | 81 | 146 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-26 | 83 | 146 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-36 | 85 | 145 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.869 | 87 | 146 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.1E-26 | 87 | 144 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MEDKYRRRSL SLLMMTSSDE VVAQEESQNE SGSPDSPPYR DAKVASTSTS SPKRSGKRGA 60 HKRVVSIPIK DVEGFRLKGE NAPPPADSWA WRKYGQKPIK GSPYPRGYYR CSSSKGCPAR 120 KQVERSRVDP TMLVITYSSD HNHPWPPPSR IHHHHSKPAA ATPICGEGSG GFGCGDVGYV 180 FADEGGGRVV VC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 4e-22 | 62 | 146 | 6 | 79 | Disease resistance protein RRS1 |
5w3x_D | 4e-22 | 62 | 146 | 6 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10007305 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021685996.1 | 7e-69 | probable WRKY transcription factor 65 | ||||
Swissprot | Q9LP56 | 1e-49 | WRK65_ARATH; Probable WRKY transcription factor 65 | ||||
TrEMBL | A0A0U1VMX9 | 3e-66 | A0A0U1VMX9_HEVBR; WRKY super family protein | ||||
STRING | Lus10007305 | 1e-139 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2770 | 34 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 5e-52 | WRKY DNA-binding protein 65 |
Link Out ? help Back to Top | |
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Phytozome | Lus10007305 |
Publications ? help Back to Top | |||
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