PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10007263 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 353aa MW: 39643.8 Da PI: 7.3095 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.6 | 4.2e-52 | 12 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 + pGfrFhPtdeelv +yL++k++++ l + e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ ++ Lus10007263 12 MLPGFRFHPTDEELVGFYLTRKIQHRALAI-ELIKQVDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeGS 108 579************************999.89***************8888999***************************************9566 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +glkk+Lvfy+gra kg ktdW+mhe+rl Lus10007263 109 KCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 139 77***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.85E-57 | 10 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.588 | 12 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-25 | 14 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MEEKSDHVEE EMLPGFRFHP TDEELVGFYL TRKIQHRALA IELIKQVDIY KYDPWDLPKL 60 ATTGEKEWYF YCPRDRKYRN SARPNRVTGA GFWKATGTDR PIYSSEGSKC IGLKKSLVFY 120 RGRAAKGIKT DWMMHEFRLP PLPDHSPSPP PHPPKKLLLD KTLPPNEAWA ICRIFKKTNS 180 MAQRALSHPW MSAPMLPAAD NSSHIFNHNN SEVGSSLVFQ QQSMFPFPAC ATNNNFIFPP 240 IESSIPPKTL QMSDPSKDST TSESLEFSGF SICNLQHSLE SSADQGDDLR KNNNINNQWV 300 GIGIGIGNGM RSSSIGFPFS LPTDDDVWDT VVHPGGDMSS TTACYSTNKC YT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-51 | 1 | 180 | 6 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-51 | 1 | 180 | 6 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-51 | 1 | 180 | 6 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-51 | 1 | 180 | 6 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-51 | 1 | 180 | 9 | 171 | NAC domain-containing protein 19 |
3swm_B | 1e-51 | 1 | 180 | 9 | 171 | NAC domain-containing protein 19 |
3swm_C | 1e-51 | 1 | 180 | 9 | 171 | NAC domain-containing protein 19 |
3swm_D | 1e-51 | 1 | 180 | 9 | 171 | NAC domain-containing protein 19 |
3swp_A | 1e-51 | 1 | 180 | 9 | 171 | NAC domain-containing protein 19 |
3swp_B | 1e-51 | 1 | 180 | 9 | 171 | NAC domain-containing protein 19 |
3swp_C | 1e-51 | 1 | 180 | 9 | 171 | NAC domain-containing protein 19 |
3swp_D | 1e-51 | 1 | 180 | 9 | 171 | NAC domain-containing protein 19 |
4dul_A | 1e-51 | 1 | 180 | 6 | 168 | NAC domain-containing protein 19 |
4dul_B | 1e-51 | 1 | 180 | 6 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10007263 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021818943.1 | 1e-130 | protein FEZ-like | ||||
Swissprot | Q9FIW5 | 4e-99 | NAC94_ARATH; Putative NAC domain-containing protein 94 | ||||
TrEMBL | A0A251Q9C6 | 1e-125 | A0A251Q9C6_PRUPE; Uncharacterized protein | ||||
TrEMBL | A0A2P6S4M6 | 1e-125 | A0A2P6S4M6_ROSCH; Putative transcription factor NAM family | ||||
STRING | Lus10007263 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2013 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 2e-96 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10007263 |