PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10007245 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | TALE | ||||||||
Protein Properties | Length: 154aa MW: 17883.2 Da PI: 7.9697 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.2 | 3.7e-10 | 74 | 109 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+ +gL+++q+ +WF N+R ++ Lus10007245 74 YKWPYPSESEKVALAETTGLDQKQINNWFINQRKRH 109 5679*****************************985 PP | |||||||
2 | ELK | 39.5 | 1.2e-13 | 29 | 50 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKYsgyL+sLkqE+s Lus10007245 29 ELKNHLLRKYSGYLSSLKQELS 50 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51213 | 11.296 | 29 | 49 | IPR005539 | ELK domain |
SMART | SM01188 | 3.5E-7 | 29 | 50 | IPR005539 | ELK domain |
Pfam | PF03789 | 7.9E-11 | 29 | 50 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.054 | 49 | 112 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.11E-20 | 50 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.6E-13 | 51 | 116 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-28 | 54 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.70E-12 | 61 | 113 | No hit | No description |
Pfam | PF05920 | 2.2E-17 | 69 | 108 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 87 | 110 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MGGSSEEEQE NSGGETELPE IDPRAEDREL KNHLLRKYSG YLSSLKQELS KKKKKGKLPK 60 EARQKLLSWW ELHYKWPYPS ESEKVALAET TGLDQKQINN WFINQRKRHW KPSEDMQFMV 120 MDGLHHHPAQ NPAAALYMDA HHYMPDGPYR LGP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably binds to the DNA sequence 5'-TGAC-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10007245 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004498934.1 | 2e-84 | homeotic protein knotted-1 isoform X1 | ||||
Refseq | XP_004498975.2 | 2e-84 | homeotic protein knotted-1 isoform X2 | ||||
Refseq | XP_006433688.1 | 2e-84 | homeotic protein knotted-1 | ||||
Refseq | XP_006472353.1 | 2e-84 | homeotic protein knotted-1 | ||||
Refseq | XP_012570771.1 | 2e-84 | homeotic protein knotted-1 isoform X1 | ||||
Swissprot | O04135 | 1e-82 | KNAP2_MALDO; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | A0A1S2Y554 | 5e-83 | A0A1S2Y554_CICAR; homeotic protein knotted-1 isoform X1 | ||||
TrEMBL | A0A2H5P6R6 | 4e-83 | A0A2H5P6R6_CITUN; Uncharacterized protein | ||||
TrEMBL | B9R6T4 | 3e-83 | B9R6T4_RICCO; Homeobox protein knotted-1, putative | ||||
TrEMBL | V4SGX4 | 4e-83 | V4SGX4_9ROSI; Uncharacterized protein | ||||
STRING | Lus10007245 | 1e-109 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4584 | 32 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 5e-67 | KNOTTED-like from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Lus10007245 |